Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate Ga0059261_2265 Ga0059261_2265 phosphoserine aminotransferase apoenzyme (EC 2.6.1.52)
Query= BRENDA::P52878 (370 letters) >FitnessBrowser__Korea:Ga0059261_2265 Length = 378 Score = 456 bits (1174), Expect = e-133 Identities = 219/369 (59%), Positives = 269/369 (72%), Gaps = 2/369 (0%) Query: 3 PTRVPNNPCFSSGPCAKHPGYSIEELKDTPFGRSHRSNLGKEKLAEAIKKTRDMLGLPDD 62 P P P FSSGPCAK PG+S ++L GRSHRS LGK +L AI R+ML LPD Sbjct: 8 PATKPARPYFSSGPCAKPPGWSADKLHTEVLGRSHRSKLGKTRLQYAIDLMREMLKLPDT 67 Query: 63 YLVGIVPASDTGAFEMCLWSMLGCRGVDVLVWESFSKGWATDITKQLKLKDVRVFEAEYG 122 + +GIVP SDTGAFEM +W+MLG RGV L WESF +GW TD KQLKL D V A+YG Sbjct: 68 HRIGIVPGSDTGAFEMAMWTMLGARGVTTLAWESFGEGWVTDAVKQLKL-DPTVIRADYG 126 Query: 123 KLPDLKKVDFKNDVVFVWNGTTSGVKVPNGDWIPENREGLTLCDATSAIFAMDIPYHKLD 182 +LPDL +VDF +DV+F WNGTTSGV+VPNGDWIP++REGLT D+TSA+FA D+P+ K+D Sbjct: 127 QLPDLSQVDFADDVLFTWNGTTSGVRVPNGDWIPDDREGLTFADSTSAVFAYDLPWDKID 186 Query: 183 VITFSWQKVLGGEGAHGMLILSPRAVQRLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTI 242 V TFSWQKVLGGEG HG+LIL PRAV+RLE YTPAWPLPK+FRL GKL + +F+G TI Sbjct: 187 VATFSWQKVLGGEGGHGVLILGPRAVERLEQYTPAWPLPKVFRLMAKGKLAEGVFKGETI 246 Query: 243 NTPSMLANEDWLATLKWAESVGGLKPLIQRTNDNLAVFEAFVAKNNWIHFLAETKEIRSS 302 NTPSMLA ED + L+WA+ +GGL LI R++ N A + VA+ +W+ LA + RS Sbjct: 247 NTPSMLAVEDAIFALEWAKGLGGLDGLIARSDANAAALDKIVAERDWLGHLAADEATRSK 306 Query: 303 TSVCFKVDLSDEK-LKELIKTLEKEKVAYDIGSYRDAPSGLRIWCGATVEKEDLQCLCEW 361 TSVC V+ +DE +K LEK AYD+ YRDAP+GLRIWCGATV+ D++ L W Sbjct: 307 TSVCLTVEGADEAFIKTFASLLEKADAAYDVAGYRDAPAGLRIWCGATVDTADIEALGPW 366 Query: 362 IEWAYNLVK 370 ++WAY K Sbjct: 367 LDWAYASAK 375 Lambda K H 0.318 0.136 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 489 Number of extensions: 17 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 378 Length adjustment: 30 Effective length of query: 340 Effective length of database: 348 Effective search space: 118320 Effective search space used: 118320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate Ga0059261_2265 Ga0059261_2265 (phosphoserine aminotransferase apoenzyme (EC 2.6.1.52))
to HMM TIGR01365 (phosphoserine aminotransferase (EC 2.6.1.52))
../bin/blast/fastacmd -i /tmp/list.11000.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11000.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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