Align methionine synthase (EC 2.1.1.13) (characterized)
to candidate Ga0059261_0990 Ga0059261_0990 methionine synthase (B12-dependent) (EC 2.1.1.13)
Query= BRENDA::P13009 (1227 letters) >FitnessBrowser__Korea:Ga0059261_0990 Length = 865 Score = 1043 bits (2696), Expect = 0.0 Identities = 545/870 (62%), Positives = 653/870 (75%), Gaps = 16/870 (1%) Query: 356 FVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVR 415 FVN+GERTNVTGSA+FK+LI Y+ A++VA QQVE+GAQ++D+NMDEG+LDA AM Sbjct: 8 FVNIGERTNVTGSARFKKLIMAGDYTAAIEVALQQVESGAQVLDVNMDEGLLDAHEAMTT 67 Query: 416 FLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRR 475 FL LI EPDIAR+P+M+DSSKWDVIE GLKC+ GK IVNSISMKEGVD F+ HA+ Sbjct: 68 FLKLIQAEPDIARIPVMVDSSKWDVIEAGLKCVSGKPIVNSISMKEGVDQFLEHARKCMA 127 Query: 476 YGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEH 535 YGAAVVVMAFDE GQADT+ RK+EIC RAYK+L +GFPPEDIIFDPN+FAVATGIEEH Sbjct: 128 YGAAVVVMAFDEVGQADTKDRKVEICERAYKLLV-GIGFPPEDIIFDPNVFAVATGIEEH 186 Query: 536 NNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMG 595 NNY DFI AC +IK PH ISGG+SN+SFSFRGN+PVR+A+H+VFLY+AI GMDM Sbjct: 187 NNYGVDFIEACREIKARCPHVHISGGLSNLSFSFRGNEPVRKAMHSVFLYHAIPAGMDMA 246 Query: 596 IVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWR 655 IVNAGQL +YD + ELR A EDVILNR + ERL+ LAEK+RG TD A Q AEWR Sbjct: 247 IVNAGQLDVYDQIEPELRTACEDVILNRDPEAGERLVALAEKFRG--TDAVAEKQAAEWR 304 Query: 656 SWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFL 715 W V KRLE++LVKGI +++ +DTEE RQ+A RPIEVIEGPLMDGMNVVGDLFG GKMFL Sbjct: 305 GWAVEKRLEHALVKGIDQYVVEDTEECRQKADRPIEVIEGPLMDGMNVVGDLFGSGKMFL 364 Query: 716 PQVVKSARVMKQAVAYLEPFIEASKEQG-KTNGKMVIATVKGDVHDIGKNIVGVVLQCNN 774 PQVVKSARVMK+AVA+L P+IEA+KE G K GK+V+ATVKGDVHDIGKNIVGVVLQCN Sbjct: 365 PQVVKSARVMKKAVAHLLPYIEAAKEPGAKGKGKVVMATVKGDVHDIGKNIVGVVLQCNG 424 Query: 775 YEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGG 834 +E+VDLGVMVP KIL A E +AD+IGLSGLITPSLDEMV VA+EM+R T+PLLIGG Sbjct: 425 FEVVDLGVMVPWSKILEAANENDADMIGLSGLITPSLDEMVTVAEEMKRARMTMPLLIGG 484 Query: 835 ATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQH 894 ATTSK HTA+KI Y GP V+V +ASR VGV L+SDT RDD+VA+ EYE VRI Sbjct: 485 ATTSKVHTALKIAPAYDGPVVHVLDASRAVGVATTLVSDTIRDDYVAKVAGEYEAVRIAR 544 Query: 895 GRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEV-EASIETLRNYIDWTPFFMT 953 K ++ V + ARDN F D + P GV + + LR YIDWTPFF Sbjct: 545 A-NKGQSELVPIAVARDNAFEAD-MSLKPGKPRMPGVHSFPDWDLADLRQYIDWTPFFRA 602 Query: 954 WSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEI 1013 W LAG YP IL D+VVG A LF DA MLDK+ EK L RGV GL+P R GDDI + Sbjct: 603 WELAGNYPAILTDKVVGESATSLFADAQKMLDKIVEEKWLTARGVAGLWPCRREGDDIIV 662 Query: 1014 YRDETRTHVINVSHHLRQQTEK-TGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDAL 1072 + ++ + + + LRQQ +K G AN CLADF+ + D+IG FAV E L Sbjct: 663 HVEDEKHVTLPM---LRQQIQKREGRANMCLADFI----DRQGDWIGGFAVGIHGIEPHL 715 Query: 1073 ADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQG 1132 A F+ DDY+ I++KALADRLAEAFAE LH VR WGYA E L+NE LI+E Y+G Sbjct: 716 A-RFKNAIDDYSDILLKALADRLAEAFAERLHHYVRTALWGYAEGEQLTNEALIKEEYRG 774 Query: 1133 IRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAV 1192 IRPAPGYPACPEH+ K ++++L+ K TG+ LTESFAM P A+VSG+YF HP ++Y+ V Sbjct: 775 IRPAPGYPACPEHSLKPILFDMLDAHKRTGISLTESFAMLPTAAVSGFYFGHPQAEYFGV 834 Query: 1193 AQIQRDQVEDYARRKGMSVTEVERWLAPNL 1222 A++ RDQ+E+YA R+G+S+ + ERWL PNL Sbjct: 835 ARVGRDQLEEYATRRGVSIEQAERWLRPNL 864 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 2622 Number of extensions: 115 Number of successful extensions: 7 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 865 Length adjustment: 45 Effective length of query: 1182 Effective length of database: 820 Effective search space: 969240 Effective search space used: 969240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)
Align methionine synthase (EC 2.1.1.13) (characterized)
to candidate Ga0059261_0991 Ga0059261_0991 Methionine synthase I (cobalamin-dependent), methyltransferase domain
Query= BRENDA::P13009 (1227 letters) >FitnessBrowser__Korea:Ga0059261_0991 Length = 348 Score = 362 bits (928), Expect = e-104 Identities = 185/345 (53%), Positives = 243/345 (70%), Gaps = 3/345 (0%) Query: 6 EQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIA 65 E+L A+ +RIL+ DG GT IQ+++L+EA + G+ D KGNND+L L+KPEV A Sbjct: 5 EKLMAEAAKRILITDGAFGTEIQNWKLDEAAYAGDLGLSH--DQKGNNDILALTKPEVPA 62 Query: 66 AIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEK 125 +IH AYFEAGADI ETNTF++ I+ ADY E L IN +AK+ARA ADE+ A+ + Sbjct: 63 SIHRAYFEAGADIAETNTFSANRISQADYGAEHLVHAINCESAKMARAIADEFEAKDG-R 121 Query: 126 PRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFD 185 PR+VAG LGPTN+T S+SPDVNDP +R I FD L YRE ALVEGG D +LIETVFD Sbjct: 122 PRFVAGALGPTNKTLSLSPDVNDPGYREIDFDHLKDVYREQIDALVEGGIDFVLIETVFD 181 Query: 186 TLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGL 245 TLNAKA + A +ALG +LPIM+S T+TD SGR LSG T EAF++++RHA+ +T GL Sbjct: 182 TLNAKAGIMAAIEAGQALGRDLPIMLSMTLTDLSGRNLSGHTVEAFWHAVRHAKPVTIGL 241 Query: 246 NCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQAGFLN 305 NC+ G ++LR +V+ LS + + + +PNAGLPN G YD +T A + EWA+ +N Sbjct: 242 NCSFGAEQLRPHVKTLSGLCDTLIMVYPNAGLPNELGAYDEAPETTAGLVGEWAEQAQVN 301 Query: 306 IVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNI 350 ++GGCCG+TP HI A++ AV GL PR +P V RL+GLEP + Sbjct: 302 VLGGCCGSTPAHIKAIADAVAGLPPRAIPVPEVRTRLAGLEPFTM 346 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1042 Number of extensions: 45 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 348 Length adjustment: 38 Effective length of query: 1189 Effective length of database: 310 Effective search space: 368590 Effective search space used: 368590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate Ga0059261_0990 Ga0059261_0990 (methionine synthase (B12-dependent) (EC 2.1.1.13))
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.602.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.602.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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