Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate Ga0059261_1675 Ga0059261_1675 acetylornithine deacetylase (ArgE)
Query= ecocyc::ACETYLORNDEACET-MONOMER (383 letters) >FitnessBrowser__Korea:Ga0059261_1675 Length = 395 Score = 191 bits (484), Expect = 4e-53 Identities = 126/365 (34%), Positives = 182/365 (49%), Gaps = 19/365 (5%) Query: 9 IEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRNKFNMLASI 68 +EI R L+ P++S SN DLI + D+ G V K N+ A+I Sbjct: 15 VEILRTLVGFPTVSR------DSNLDLIHWVRDYLASHGV-ASVLTSGKDPGKANLFATI 67 Query: 69 GQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDALRDVD 128 G G GG++L+GH+D VP D W +PF L E DG L+G GT DMKGF A L + + Sbjct: 68 GSGEGGIVLSGHSDVVPVDGQDWHSNPFVLEERDGLLFGRGTCDMKGFIAACLAKVPMLA 127 Query: 129 VTKLKKPLYILATADEETSMAGARYFAE---TTALRPDCAIIGEPTSLQPVRAHKGHISN 185 L +P+++ + DEE GA + E LRP ++GEPTS++PV HK + Sbjct: 128 SANLNEPVHLAISFDEEIGCKGAGHMIEELVARGLRPRGCVVGEPTSMEPVIGHKTGSAY 187 Query: 186 AIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLK-ERYHYEAFTVPYPTLNLGHI 244 + G HSS GVNAI I I + L+ E + ++VP+ TL+ G I Sbjct: 188 GCAVHGLEAHSSLAPYGVNAIFYAARLIARIEAIAARLRAEERRHPGYSVPFSTLSAGVI 247 Query: 245 HGGDASNRICACCELHMDIRPL----PGMTLNELNGLLNDALAPVSERWPGRLTVD-ELH 299 GG ASN + A C DIR L P + EL ++ L P ++ ++ Sbjct: 248 EGGQASNIVPALCRFRFDIRTLPWTDPDAIIAELQTYIDHELLPEMRAVHAGARIEITMN 307 Query: 300 PPIPGYECPPNHQLVEVVEKLLGAKTE--VVNYCTEAPFIQTL-CPTLVLGPGSINQAHQ 356 +PG+ + L V++L G+ E V + +EA Q PT++ GPGSI QAH+ Sbjct: 308 GRVPGFAIDADAPLTRHVQRLAGSNAEPGFVAFGSEAGLFQARGVPTILCGPGSIEQAHK 367 Query: 357 PDEYL 361 PDE++ Sbjct: 368 PDEFV 372 Lambda K H 0.320 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 388 Number of extensions: 20 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 383 Length of database: 395 Length adjustment: 30 Effective length of query: 353 Effective length of database: 365 Effective search space: 128845 Effective search space used: 128845 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate Ga0059261_1675 Ga0059261_1675 (acetylornithine deacetylase (ArgE))
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))
../bin/blast/fastacmd -i /tmp/list.19483.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19483.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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