Align Threonine synthase; TS; EC 4.2.3.1 (characterized)
to candidate Ga0059261_1999 Ga0059261_1999 threonine synthase
Query= SwissProt::P23669 (481 letters) >FitnessBrowser__Korea:Ga0059261_1999 Length = 466 Score = 330 bits (846), Expect = 6e-95 Identities = 201/477 (42%), Positives = 278/477 (58%), Gaps = 21/477 (4%) Query: 1 MDYISTRDASRTPARFSDILLGGLAPDGGLYLPATYPQLDDAQLSKWREVLANEGYAALA 60 M Y STR + F D+ L GLA DGGLY+P +P+ Q++ LA Y A Sbjct: 1 MRYQSTRGTA-PELDFRDVTLAGLAKDGGLYVPVEWPRFTPEQIAD----LAGLSYVETA 55 Query: 61 AEVISLFV-DDIPVEDIKAITARAYTYPKFNSEDIVPVTELEDNIYLGHLSEGPTAAFKD 119 V++ F + +++ + AY +F+ + + P+ +L+ +L L GPT AFKD Sbjct: 56 VRVMAPFTAGSLSEAELRELCTAAYG--RFSHDAVTPLVQLDHRHFLLELFHGPTLAFKD 113 Query: 120 MAMQLLGELFEYELRRRNETINILGATSGDTGSSAEYAMRGREGIRVFMLTPAGRMTPFQ 179 +A+QLLG FE L+ ++ + I+GATSGDTGS+A A+ GREGI +FML P R++ Q Sbjct: 114 VALQLLGLFFERFLKGTDQHLTIVGATSGDTGSAAIDAVAGREGIDIFMLHPNKRVSDVQ 173 Query: 180 QAQMFGLDDPNIFNIALDGVFDDCQDVVKAVSADAEFKKDNRIGAVNSINWARLMAQVVY 239 + QM + PN+ NIA++G FDD Q +VKA+ DA F ++ AVNSINWARLMAQVVY Sbjct: 174 RRQMTTVLSPNVHNIAIEGSFDDAQAMVKAMFNDAGFAGRFQVTAVNSINWARLMAQVVY 233 Query: 240 YVSSWIRTTTSNDQKVSFSVPTGNFGDICAGHIARQMGLPIDRLIVATNENDVLDEFFRT 299 Y + +R N + V+FSVPTGNFGD+ AG++A +MGLP+ +LIVATN ND+L Sbjct: 234 YFYAAVRLGAPN-RAVAFSVPTGNFGDVFAGYVAARMGLPVAKLIVATNVNDILHRALSA 292 Query: 300 GDYRVRSSADTHETSSPSMDISRASNFERFIFDLLGRDATRVNDLFGTQVRQGGFSLADD 359 GDY S+ T++PSMDI +SNFER +FDL GRD + D Q+R GF + Sbjct: 293 GDY---STGTVTPTAAPSMDIQVSSNFERLLFDLAGRDGAALAD----QMR--GFEASKA 343 Query: 360 ---ANFEKAAAEYGFASGRSTHADRVATIADVHSRLDVLIDPHTADGVHVARQWRDEVNT 416 N ++ A FAS R A+ +A H+R D ++DPHTA G+ AR+ + Sbjct: 344 MRLTNAQQEGAAKLFASDRIDAAEMAQAMAWAHARADEILDPHTAIGLAAARRADIATDV 403 Query: 417 PIIVLETALPVKFADTIVEAIGEAPQTPERFAAIMDAPFKVSDLPNDTDAVKQYIVD 473 PI+ L TA P KF D + A G P P R + D + LP DAV YI + Sbjct: 404 PIVTLATAHPAKFGDAVERATGIRPTLPARIGDLFDREERYDVLPATFDAVTGYIAE 460 Lambda K H 0.319 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 588 Number of extensions: 25 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 481 Length of database: 466 Length adjustment: 33 Effective length of query: 448 Effective length of database: 433 Effective search space: 193984 Effective search space used: 193984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate Ga0059261_1999 Ga0059261_1999 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))
../bin/blast/fastacmd -i /tmp/list.32441.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32441.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.