GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argB in Klebsiella michiganensis M5al

Align acetylglutamate kinase; EC 2.7.2.8 (characterized)
to candidate BWI76_RS00850 BWI76_RS00850 acetylglutamate kinase

Query= CharProtDB::CH_001694
         (258 letters)



>FitnessBrowser__Koxy:BWI76_RS00850
          Length = 257

 Score =  470 bits (1209), Expect = e-137
 Identities = 241/257 (93%), Positives = 248/257 (96%)

Query: 2   MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKK 61
           MNPLIIKLGGVLLDSEEALERLF+ALVNYRESHQRPL+IVHGGGCVVDELMK LNLPV K
Sbjct: 1   MNPLIIKLGGVLLDSEEALERLFTALVNYRESHQRPLIIVHGGGCVVDELMKQLNLPVNK 60

Query: 62  KNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGH 121
           KNGLRVTPADQIDIITGALAGTANKTLLAWAKKH +AAVGLFLGDGDSVKVTQLDEELGH
Sbjct: 61  KNGLRVTPADQIDIITGALAGTANKTLLAWAKKHGLAAVGLFLGDGDSVKVTQLDEELGH 120

Query: 122 VGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSD 181
           VG AQPGSP LIN+LL  GY+PVVSSIGVTDEG+LMNVNADQAATALAATLGADLILLSD
Sbjct: 121 VGFAQPGSPALINTLLAGGYMPVVSSIGVTDEGELMNVNADQAATALAATLGADLILLSD 180

Query: 182 VSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAE 241
           VSGILDGKGQRIAEMTA KAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAE
Sbjct: 181 VSGILDGKGQRIAEMTAEKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAE 240

Query: 242 QLPALFNGMPMGTRILA 258
           QLPALFNG P+GTRILA
Sbjct: 241 QLPALFNGTPIGTRILA 257


Lambda     K      H
   0.317    0.136    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 355
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 257
Length adjustment: 24
Effective length of query: 234
Effective length of database: 233
Effective search space:    54522
Effective search space used:    54522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate BWI76_RS00850 BWI76_RS00850 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.18062.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18062.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.