GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argC in Klebsiella michiganensis M5al

Align N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) (characterized)
to candidate BWI76_RS00845 BWI76_RS00845 N-acetyl-gamma-glutamyl-phosphate reductase

Query= BRENDA::P11446
         (334 letters)



>FitnessBrowser__Koxy:BWI76_RS00845
          Length = 334

 Score =  610 bits (1572), Expect = e-179
 Identities = 302/334 (90%), Positives = 312/334 (93%)

Query: 1   MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVDLPL 60
           MLNTLIVGASGYAGAELV YVNRHPHM ITALTVSAQSNDAGKL+SDLHPQLKGIVDLPL
Sbjct: 1   MLNTLIVGASGYAGAELVAYVNRHPHMTITALTVSAQSNDAGKLVSDLHPQLKGIVDLPL 60

Query: 61  QPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGF 120
           QPMSDISEFS GVDVVFLATAHEVSHDLAPQFL AGCVVFDLSGAFRVND  FYEKYYGF
Sbjct: 61  QPMSDISEFSAGVDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVNDGAFYEKYYGF 120

Query: 121 THQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVI 180
           THQ+PELLEQA YGLAEW   KLKEANLIAVPGCYPTAAQL+LKPLIDA LLDLNQWPVI
Sbjct: 121 THQHPELLEQAVYGLAEWSVEKLKEANLIAVPGCYPTAAQLSLKPLIDAGLLDLNQWPVI 180

Query: 181 NATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGADVIFTPHLGNFPRGIL 240
           NATSGVSGAGRKA+I NSFCEVSLQPYGVF HRH PEI+THLGADVIFTPHLGNF RGIL
Sbjct: 181 NATSGVSGAGRKASIGNSFCEVSLQPYGVFNHRHHPEISTHLGADVIFTPHLGNFKRGIL 240

Query: 241 ETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKGVPALKNVVGLPFCDIGFAVQGEHL 300
           ETITCRLK GV++ QVA V QQAYA KPLVRLYDKGVPALKNVVGLPFCDIGFAVQ EH+
Sbjct: 241 ETITCRLKPGVSKEQVAAVFQQAYADKPLVRLYDKGVPALKNVVGLPFCDIGFAVQDEHI 300

Query: 301 IIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI 334
           I+VA EDNLLKGAAAQAVQCANIRFG+AETQSLI
Sbjct: 301 IVVAAEDNLLKGAAAQAVQCANIRFGFAETQSLI 334


Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 560
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 334
Length adjustment: 28
Effective length of query: 306
Effective length of database: 306
Effective search space:    93636
Effective search space used:    93636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate BWI76_RS00845 BWI76_RS00845 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.14633.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14633.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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