GapMind for Amino acid biosynthesis

 

Alignments for a candidate for proB in Klebsiella michiganensis M5al

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate BWI76_RS05840 BWI76_RS05840 glutamate 5-kinase

Query= BRENDA::P0A7B5
         (367 letters)



>FitnessBrowser__Koxy:BWI76_RS05840
          Length = 367

 Score =  680 bits (1754), Expect = 0.0
 Identities = 348/367 (94%), Positives = 358/367 (97%)

Query: 1   MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL 60
           MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHA GHRIVIVTSGAIAAGREHL
Sbjct: 1   MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAMGHRIVIVTSGAIAAGREHL 60

Query: 61  GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT 120
           GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT
Sbjct: 61  GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT 120

Query: 121 LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPR 180
           LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQ+GL+TADPR
Sbjct: 121 LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQQGLFTADPR 180

Query: 181 SNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPG 240
           +NPQAELIKDVYGIDDALRAIAGDSVSGLGTGGM TKLQAADVACRAGIDTIIAAGS+PG
Sbjct: 181 NNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMGTKLQAADVACRAGIDTIIAAGSRPG 240

Query: 241 VIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGI 300
           VIGDVMEG+SVGT FHAQ +PLENRKRWIFGAPPAGEITVD GAT AILERGSSLLPKGI
Sbjct: 241 VIGDVMEGVSVGTRFHAQESPLENRKRWIFGAPPAGEITVDAGATQAILERGSSLLPKGI 300

Query: 301 KSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVH 360
           K++TGNFSRGEVIRI +LEGRDIAHGVSRYNSDALRRIAG HSQ+IDAILGYEYGPVAVH
Sbjct: 301 KTITGNFSRGEVIRIRSLEGRDIAHGVSRYNSDALRRIAGQHSQQIDAILGYEYGPVAVH 360

Query: 361 RDDMITR 367
           RDDMI R
Sbjct: 361 RDDMIIR 367


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 587
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 367
Length adjustment: 30
Effective length of query: 337
Effective length of database: 337
Effective search space:   113569
Effective search space used:   113569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate BWI76_RS05840 BWI76_RS05840 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.18011.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18011.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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