GapMind for Amino acid biosynthesis

 

Alignments for a candidate for proC in Klebsiella michiganensis M5al

Align pyrroline-5-carboxylate reductase (characterized)
to candidate BWI76_RS06170 BWI76_RS06170 pyrroline-5-carboxylate reductase

Query= CharProtDB::CH_024367
         (269 letters)



>FitnessBrowser__Koxy:BWI76_RS06170
          Length = 269

 Score =  491 bits (1263), Expect = e-144
 Identities = 244/269 (90%), Positives = 263/269 (97%)

Query: 1   MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEV 60
           MEKKIGFIGCGNMGKAILGGLIASGQV PGQIWVYTPSPDKVAALHDQ+GINAA+SAQEV
Sbjct: 1   MEKKIGFIGCGNMGKAILGGLIASGQVQPGQIWVYTPSPDKVAALHDQYGINAAQSAQEV 60

Query: 61  AQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMP 120
           AQ+ADI+F AVKPG+M+KVLS+I SSLNKDSLVVSIAAGVTLDQLARALGHDRKI+RAMP
Sbjct: 61  AQVADIVFGAVKPGVMVKVLSDIASSLNKDSLVVSIAAGVTLDQLARALGHDRKIVRAMP 120

Query: 121 NTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVF 180
           NTP+LVNAGMTSVTPNALV+ E+TA++L IFRCFG+AE+IAEPMIHPVVGVSGS+PAYVF
Sbjct: 121 NTPSLVNAGMTSVTPNALVSAEETAEILTIFRCFGQAEIIAEPMIHPVVGVSGSAPAYVF 180

Query: 181 MFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAV 240
           MFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLE+GEHPGALKDMVCSPGGTTIEAV
Sbjct: 181 MFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLESGEHPGALKDMVCSPGGTTIEAV 240

Query: 241 RVLEEKGFRAAVIEAMTKCMEKSEKLSKS 269
           RVLEEKGFR+AVIEAM KCMEKSEKLS+S
Sbjct: 241 RVLEEKGFRSAVIEAMVKCMEKSEKLSRS 269


Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 393
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 269
Length adjustment: 25
Effective length of query: 244
Effective length of database: 244
Effective search space:    59536
Effective search space used:    59536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate BWI76_RS06170 BWI76_RS06170 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.8170.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8170.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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