Align pyrroline-5-carboxylate reductase (characterized)
to candidate BWI76_RS06170 BWI76_RS06170 pyrroline-5-carboxylate reductase
Query= CharProtDB::CH_024367 (269 letters) >FitnessBrowser__Koxy:BWI76_RS06170 Length = 269 Score = 491 bits (1263), Expect = e-144 Identities = 244/269 (90%), Positives = 263/269 (97%) Query: 1 MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEV 60 MEKKIGFIGCGNMGKAILGGLIASGQV PGQIWVYTPSPDKVAALHDQ+GINAA+SAQEV Sbjct: 1 MEKKIGFIGCGNMGKAILGGLIASGQVQPGQIWVYTPSPDKVAALHDQYGINAAQSAQEV 60 Query: 61 AQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMP 120 AQ+ADI+F AVKPG+M+KVLS+I SSLNKDSLVVSIAAGVTLDQLARALGHDRKI+RAMP Sbjct: 61 AQVADIVFGAVKPGVMVKVLSDIASSLNKDSLVVSIAAGVTLDQLARALGHDRKIVRAMP 120 Query: 121 NTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVF 180 NTP+LVNAGMTSVTPNALV+ E+TA++L IFRCFG+AE+IAEPMIHPVVGVSGS+PAYVF Sbjct: 121 NTPSLVNAGMTSVTPNALVSAEETAEILTIFRCFGQAEIIAEPMIHPVVGVSGSAPAYVF 180 Query: 181 MFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAV 240 MFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLE+GEHPGALKDMVCSPGGTTIEAV Sbjct: 181 MFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLESGEHPGALKDMVCSPGGTTIEAV 240 Query: 241 RVLEEKGFRAAVIEAMTKCMEKSEKLSKS 269 RVLEEKGFR+AVIEAM KCMEKSEKLS+S Sbjct: 241 RVLEEKGFRSAVIEAMVKCMEKSEKLSRS 269 Lambda K H 0.318 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 393 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 269 Length of database: 269 Length adjustment: 25 Effective length of query: 244 Effective length of database: 244 Effective search space: 59536 Effective search space used: 59536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate BWI76_RS06170 BWI76_RS06170 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.8170.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8170.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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