Align N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) (characterized)
to candidate 199470 SO0275 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI ptt file)
Query= BRENDA::P11446 (334 letters) >FitnessBrowser__MR1:199470 Length = 326 Score = 298 bits (762), Expect = 2e-85 Identities = 165/329 (50%), Positives = 208/329 (63%), Gaps = 9/329 (2%) Query: 1 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVDLPL 60 M N I+GASGY GA+L V+ ++I L VS S D G+ ++DL+P I +L L Sbjct: 1 MKNIAIIGASGYTGAQLTALVHAESELSIQGLYVSENSLDKGRALADLYPVYSHI-ELTL 59 Query: 61 QPMSDISEFS--PGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYY 118 P+++ ++ + D V LAT H VS LA F G VFDLSGA+R +D Y K+Y Sbjct: 60 SPLTEEAKANIVAEADAVVLATEHSVSLHLAAWFYSQGLAVFDLSGAYRFSDVAQYPKWY 119 Query: 119 GFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQWP 178 GF H+YPE+L +A YGLAEW + +IAVPGCYPTA+ ALKPL + L + +P Sbjct: 120 GFEHEYPEVLAKAVYGLAEWNAKDVAATKMIAVPGCYPTASLTALKPLKN---LLTSAYP 176 Query: 179 VINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGADVIFTPHLGNFPRG 238 VINA SGV+GAGRKA + SFCEVSL PYGV HRHQPEIAT LG +VIFTPHLGNF RG Sbjct: 177 VINAVSGVTGAGRKAQLHTSFCEVSLTPYGVLGHRHQPEIATQLGQEVIFTPHLGNFKRG 236 Query: 239 ILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKGVPALKNVVGLPFCDIG--FAVQ 296 IL TIT +LK G T A VA Y PLV + P + +VV P C +G F Sbjct: 237 ILATITVQLKPGTTTADVA-AAYSVYDQAPLVTVKQNQFPKVDDVVLTPNCHLGWKFDES 295 Query: 297 GEHLIIVATEDNLLKGAAAQAVQCANIRF 325 +L++ + DNL+KGAA+QA+QC I F Sbjct: 296 SGYLVVASAIDNLMKGAASQALQCIKIHF 324 Lambda K H 0.321 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 353 Number of extensions: 11 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 334 Length of database: 326 Length adjustment: 28 Effective length of query: 306 Effective length of database: 298 Effective search space: 91188 Effective search space used: 91188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 199470 SO0275 (N-acetyl-gamma-glutamyl-phosphate reductase (NCBI ptt file))
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.1367.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1367.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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