Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate 199473 SO0278 argininosuccinate synthase (NCBI ptt file)
Query= SwissProt::P59846 (400 letters) >FitnessBrowser__MR1:199473 Length = 407 Score = 422 bits (1085), Expect = e-123 Identities = 213/393 (54%), Positives = 274/393 (69%), Gaps = 2/393 (0%) Query: 2 KIVLAYSGGLDTSIILKWLKETY-RAEVIAFTADIGQGEE-VEEAREKALRTGASKAIAL 59 K+VLAYSGGLDTS I+ WLKE Y E+IAF AD+GQGEE + EKAL +GAS+ + Sbjct: 12 KVVLAYSGGLDTSAIIPWLKENYDNCEIIAFCADVGQGEEELIGLTEKALASGASECHIV 71 Query: 60 DLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKG 119 DLKEEFV+D+++P M GA+YEG YLLGTS+ARP+IAK V +A + GA+A+ HG TGKG Sbjct: 72 DLKEEFVKDYIYPTMATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADALCHGCTGKG 131 Query: 120 NDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLL 179 NDQVRFE AL PD+KVIAPWREW+ Q R++++AY I + K YS DAN Sbjct: 132 NDQVRFEGCFAALAPDLKVIAPWREWTMQSREDLLAYLAERNIKTSASATKIYSRDANAF 191 Query: 180 HISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALL 239 HIS+EGG LEDPW EP KG++ +T DPE+AP+ EYV +E G VNGE L+P A L Sbjct: 192 HISHEGGELEDPWNEPSKGVWTLTADPEDAPNQAEYVSLEVENGRVTKVNGEALTPYAAL 251 Query: 240 QRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRD 299 +LN I HGVGR+DI ENR VGMKSRG YETPGGT+++ A RA+E L LD+ + R+ Sbjct: 252 MKLNAIAAPHGVGRIDITENRLVGMKSRGCYETPGGTVMFAALRAIEELVLDKTSRNWRE 311 Query: 300 MLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYR 359 + + A LVY G W+ P ++L A + +A SV G +KLYKG+ V +++P SLY Sbjct: 312 QVGAQMAHLVYDGRWFTPLCKSLLAASESLAESVNGEVVVKLYKGHAIAVKKRSPNSLYS 371 Query: 360 QDLVSFDEAGGYDQKDAEGFIKIQALRLRVRAL 392 + +F E YDQK AEGFI++ +L R+RAL Sbjct: 372 EAFATFGEDQVYDQKHAEGFIRLYSLASRIRAL 404 Lambda K H 0.319 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 436 Number of extensions: 15 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 407 Length adjustment: 31 Effective length of query: 369 Effective length of database: 376 Effective search space: 138744 Effective search space used: 138744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate 199473 SO0278 (argininosuccinate synthase (NCBI ptt file))
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))
../bin/blast/fastacmd -i /tmp/list.17901.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17901.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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