Align asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 (characterized)
to candidate 202285 SO3175 asparagine synthetase, glutamine-hydrolyzing (NCBI ptt file)
Query= CharProtDB::CH_005185 (632 letters) >FitnessBrowser__MR1:202285 Length = 643 Score = 315 bits (806), Expect = 5e-90 Identities = 204/647 (31%), Positives = 348/647 (53%), Gaps = 47/647 (7%) Query: 1 MCGFVGVFNKHPLAQTADQEELIKQMNQMIVHRGPDSDGYFH--DEHVGFGFRRLSIIDV 58 MCGF G FN L D +++ M + +RGPDS G + D+ +G RRL+I+D+ Sbjct: 1 MCGFAGFFNTSNLT---DHARILECMGLELFNRGPDSFGIWFNSDDRIGLVHRRLAIVDL 57 Query: 59 ENGG-QPLSYEDETYWIIFNGEIYNYIELREELEA-KGYTFNTDSDTEVLLATYRHYKEE 116 G QP++ + Y I +NGEIYN+ ELR+ELE+ + Y + SDTE LLA + + Sbjct: 58 SAAGHQPMTSDSGRYIISYNGEIYNHQELRDELESIRQYNWRGHSDTETLLAAIEQWGLK 117 Query: 117 AA-SKLRGMFAFLIWNKNDHVLYGARDPFGIKPLYYTTINDQVYFASERKSLMVAQN-DI 174 K GMF +W+ + LY ARD FG KP+YY D FAS+ + + Sbjct: 118 ITLQKATGMFGIALWDTLNKELYLARDRFGEKPVYYGLHKDAFIFASQLNAFRAYPDFKP 177 Query: 175 EIDKEALQQYMSFQFVPEPSTLDAHVKKVEPGSQFTIRPDGDITFKTYFKAN---FKPVQ 231 EI+++++ + ++P P ++ + + K+ P + + + +I+ +TY+ A Sbjct: 178 EINRDSITLLLRHNYIPAPYSIYSDIHKLLPATILKLDSNNNISLETYWSAKDIMSNASS 237 Query: 232 TEED----KLVKEVRDAIYDSVNVHMRSDVPVGSFLSGGIDSSFIVSVAK-EFHPSLKTF 286 TE D K V+ + + + +V + M +DVP+G+FLSGG+DSS IVS+ + + + +KTF Sbjct: 238 TETDLPVGKQVEALENTLKKAVALQMSADVPLGAFLSGGVDSSLIVSLMQAQSNKPVKTF 297 Query: 287 SVGFEQQGFSEVDVAKETAAALGIENISKVISPEEYMNELPKIVWHFDDPLADPAAIPLY 346 S+GF+ F+E AKE A LG E+ ++ E+ + +PK+ +D+P +D + IP + Sbjct: 298 SIGFDDPRFNEAVFAKEVAKHLGTEHTELYLTAEDALEVIPKLAEIYDEPFSDSSQIPTF 357 Query: 347 FVAKEAKKHVTVALSGEGADELFGGYNIYREPLSL-KPFERIPSGLKKMLLHVAAVMPE- 404 V+K A+++VTV+LSG+ DELF GYN Y + K +P L+ L +V +P Sbjct: 358 LVSKIARQYVTVSLSGDAGDELFCGYNRYLMTSKVWKRLSVLPVFLRSFLANVFTFVPVN 417 Query: 405 --GMRGKSLLER-----------------GCTPLQDRYIGNAKIFEESVKKQLLKHYNPN 445 + GK L R C ++ Y+G + ++ ++ +L P Sbjct: 418 VWNLFGKLLPSRLQLSNLGDKLHKAAAVLACRDVEQLYLGLVSHW-QNPEQVVLGSKEPL 476 Query: 446 LSYRDVTKTYFTESSSYSD-INKMQYVDIHTWMRGDILLKADKMTMANSLELRVPFLDKV 504 D + +++SD I +M D +++ DIL+K D+ MA SLE RVPFLD Sbjct: 477 TVLTDPKR-----KANFSDPILQMMAQDTLSYLTDDILVKVDRAAMAVSLETRVPFLDHS 531 Query: 505 VFDVASKIPDELKTKNGTTKYLLRKAAEGIVPEHVLNRKKLGFPVPIRHWLKNEMNEWVR 564 V + A ++ +LK ++G TK+ LR+ VP+ ++ R K+GF VP+ WL+ + W Sbjct: 532 VLEHAWRLSLDLKLRDGKTKWCLREILYKYVPKDLIERPKMGFAVPLDAWLRGPLKVWAD 591 Query: 565 NII--QESQTDAYIHKDYVLQLLEDHCADKADNSRKIWTVLIFMIWH 609 N++ + + + + + + ++ ++H + K + ++W +L+F W+ Sbjct: 592 NLLAAERLRQEGFFDAELIDRMWQEHKSGKRNWQYQLWDILMFQSWY 638 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1017 Number of extensions: 63 Number of successful extensions: 10 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 632 Length of database: 643 Length adjustment: 38 Effective length of query: 594 Effective length of database: 605 Effective search space: 359370 Effective search space used: 359370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate 202285 SO3175 (asparagine synthetase, glutamine-hydrolyzing (NCBI ptt file))
to HMM TIGR01536 (asnB: asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4))
../bin/blast/fastacmd -i /tmp/list.21054.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21054.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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