GapMind for Amino acid biosynthesis

 

Alignments for a candidate for asd in Shewanella oneidensis MR-1

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate 202188 SO3070 aspartate semialdehyde dehydrogenese (NCBI ptt file)

Query= SwissProt::P23247
         (337 letters)



>FitnessBrowser__MR1:202188
          Length = 338

 Score =  482 bits (1240), Expect = e-141
 Identities = 236/338 (69%), Positives = 271/338 (80%), Gaps = 1/338 (0%)

Query: 1   MSQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE 60
           MSQ+FNV + GA+GAVG+TM+E+L+ER FPV  L+ LAS RS G+T  F+GK + + +VE
Sbjct: 1   MSQEFNVVVLGASGAVGQTMIEILEERNFPVANLYPLASSRSAGETVSFHGKQITILDVE 60

Query: 61  EFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 120
            FDWSQ  +  FSAGG++SAKWAPIAAEAG VVIDNTSHFRYD DIPLVVPEVNP AIA+
Sbjct: 61  TFDWSQAQLGFFSAGGDVSAKWAPIAAEAGCVVIDNTSHFRYDIDIPLVVPEVNPHAIAD 120

Query: 121 FRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLL 180
           FRNRNIIANPNCSTIQMLVALKPIYD  GI RINV TYQSVSG GK  I+ELA Q  KLL
Sbjct: 121 FRNRNIIANPNCSTIQMLVALKPIYDTYGISRINVATYQSVSGTGKKAIEELARQCTKLL 180

Query: 181 NGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVP 240
            G PAE   + +QIAFN +PQID+FMDNGYTKEEMKMVWETQKIF D  I+VN T VRVP
Sbjct: 181 QGLPAEAEVYPKQIAFNVLPQIDKFMDNGYTKEEMKMVWETQKIFGDDDILVNATAVRVP 240

Query: 241 VFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRGAD-FPTQVRDAGGKDHVLVGRVR 299
           VFYGH+EAVH+ETR P DAE +  +L   +G+ LF   D +PT V  A G D V VGRVR
Sbjct: 241 VFYGHSEAVHIETRQPADAEDIKALLRNAEGVVLFESDDEYPTAVTHAAGTDPVYVGRVR 300

Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELLVRDYF 337
            DISH  GINLWVV+DN+RKGAA N+VQIAE+LVRDY+
Sbjct: 301 KDISHAHGINLWVVSDNIRKGAALNSVQIAEILVRDYY 338


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 392
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 338
Length adjustment: 28
Effective length of query: 309
Effective length of database: 310
Effective search space:    95790
Effective search space used:    95790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate 202188 SO3070 (aspartate semialdehyde dehydrogenese (NCBI ptt file))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.19818.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19818.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.