Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate 203315 SO4234 3-isopropylmalate dehydratase, large subunit (NCBI ptt file)
Query= CharProtDB::CH_024771 (466 letters) >FitnessBrowser__MR1:203315 Length = 474 Score = 699 bits (1805), Expect = 0.0 Identities = 340/461 (73%), Positives = 395/461 (85%) Query: 3 KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62 KTLY+K++DAH+V E E P++Y+DRHLVHEVTSPQAF GL+ GR +R P KTFATMD Sbjct: 11 KTLYQKVWDAHIVATPEGEAPIIYVDRHLVHEVTSPQAFSGLKVAGRQLRAPEKTFATMD 70 Query: 63 HNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPGM 122 HN ST++ ++A MARIQ++ L +NCK+FGV LYD++HP QGIVHVMGPE G+TLPG Sbjct: 71 HNTSTRSASLDALSPMARIQVETLAQNCKDFGVLLYDIHHPNQGIVHVMGPELGITLPGT 130 Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKD 182 IVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL+Q +AKTMKIEV+G+ G+TAKD Sbjct: 131 VIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLRQLKAKTMKIEVRGQVTDGVTAKD 190 Query: 183 IVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242 IVLAIIGK G GGTG+VVEFCGEAI LSMEGRMT+CNMAIEMGAKAG+VAPD+TTF+Y Sbjct: 191 IVLAIIGKIGMDGGTGYVVEFCGEAIEALSMEGRMTVCNMAIEMGAKAGMVAPDQTTFDY 250 Query: 243 VKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVND 302 ++GR APKG+D+ AVA WKTL+TD GA FD V L A +I+PQ+TWGTNPGQV++++ Sbjct: 251 LEGREFAPKGEDWAQAVAEWKTLKTDVGAEFDATVVLDAADIAPQLTWGTNPGQVVAIDA 310 Query: 303 NIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEIA 362 +P+PA +P R+S EKAL Y+GL G P+TEVAI+KVFIGSCTNSRIEDLR+AA+ A Sbjct: 311 PVPNPADEVNPTIRSSMEKALDYIGLTAGTPMTEVAINKVFIGSCTNSRIEDLRSAAKHA 370 Query: 363 KGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGE 422 KGRKVA GV A+VVPGSG VKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMN+DRL G+ Sbjct: 371 KGRKVAAGVTAIVVPGSGQVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNDDRLEAGD 430 Query: 423 RCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIR 463 RCASTSNRNFEGRQGRG RTHLVSPAMAAAAA+ GHF DIR Sbjct: 431 RCASTSNRNFEGRQGRGSRTHLVSPAMAAAAAIAGHFVDIR 471 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 783 Number of extensions: 14 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 474 Length adjustment: 33 Effective length of query: 433 Effective length of database: 441 Effective search space: 190953 Effective search space used: 190953 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate 203315 SO4234 (3-isopropylmalate dehydratase, large subunit (NCBI ptt file))
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.15346.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15346.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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