Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate 203070 SO3986 aspartokinase III, lysine-sensitive (NCBI ptt file)
Query= BRENDA::P08660 (449 letters) >FitnessBrowser__MR1:203070 Length = 451 Score = 514 bits (1324), Expect = e-150 Identities = 270/447 (60%), Positives = 339/447 (75%), Gaps = 1/447 (0%) Query: 4 IVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALA-EGLEPGERFE 62 +VV+KFGGTSVAD+ AMNR A+IVL + + RLVV+SAS+G+TNLLV L E + R + Sbjct: 3 LVVAKFGGTSVADYGAMNRCAEIVLGNPDCRLVVVSASSGVTNLLVELTQESINDDGRLQ 62 Query: 63 KLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMS 122 +L I IQ+AIL++L PN + +++LL + VL+EA A S A DEL+S GE S Sbjct: 63 RLKQIAQIQYAILDKLGRPNDVAAALDKLLSRMAVLSEALVSARSKATMDELLSLGEQCS 122 Query: 123 TLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVITQ 182 + LF +LRE+ + FDVR+V+RT+ FGRAEP + +A L+ LLP L+E +++TQ Sbjct: 123 SALFAAVLREKGANSSAFDVRRVLRTDSHFGRAEPQVEQIALLSREHLLPLLSEQVIVTQ 182 Query: 183 GFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDE 242 GFIG++ G+TTTLGRGGSDY+AALLAEAL AS V+IWTDV GIYTTDPR+ A I E Sbjct: 183 GFIGADEAGQTTTLGRGGSDYSAALLAEALTASAVEIWTDVAGIYTTDPRLAPNAHPIAE 242 Query: 243 IAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRAL 302 I+F EAAEMATFGAKVLHPAT+LPAVR I VFVGSSK+P GGT + ++ E+ P+FRA+ Sbjct: 243 ISFNEAAEMATFGAKVLHPATILPAVRQQIQVFVGSSKEPEKGGTWIRHQVEDAPVFRAV 302 Query: 303 ALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTG 362 ALRR+QTLL LHSL MLH++GFLAE F LARH ISVDLITTSEV+V+LTLD TGS S+G Sbjct: 303 ALRRDQTLLNLHSLQMLHAQGFLAETFATLARHKISVDLITTSEVNVSLTLDKTGSDSSG 362 Query: 363 DTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGA 422 LL+++LL ELS CRV VE+GLALVA+IGN ++ G+ + VF VLEP N+RMIC GA Sbjct: 363 QGLLSEALLQELSQHCRVRVEDGLALVAIIGNRIATTAGICRRVFEVLEPHNVRMICQGA 422 Query: 423 SSHNLCFLVPGEDAEQVVQKLHSNLFE 449 S HNLC LV +A QVV+ LH NLFE Sbjct: 423 SPHNLCVLVAESEAAQVVKALHENLFE 449 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 502 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 449 Length of database: 451 Length adjustment: 33 Effective length of query: 416 Effective length of database: 418 Effective search space: 173888 Effective search space used: 173888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate 203070 SO3986 (aspartokinase III, lysine-sensitive (NCBI ptt file))
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.31831.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31831.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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