Align succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) (characterized)
to candidate 201612 SO2471 succinyl-diaminopimelate desuccinylase (NCBI ptt file)
Query= BRENDA::Q9KQ52 (377 letters) >FitnessBrowser__MR1:201612 Length = 384 Score = 521 bits (1341), Expect = e-152 Identities = 253/372 (68%), Positives = 293/372 (78%) Query: 5 PVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTNFWARRGTQSPLFV 64 PV L K LI+R SVTP D GCQ LM ERL A+GF IE+MVFEDTTN WARRG P+F Sbjct: 12 PVTELTKALIARPSVTPLDEGCQTLMAERLAAIGFNIEAMVFEDTTNMWARRGNTGPVFC 71 Query: 65 FAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQ 124 FAGHTDVVP G LS+WHTPPFEPT+IDG+L+GRGAADMKGSLA M+VA ERF+A+HP+H Sbjct: 72 FAGHTDVVPTGDLSRWHTPPFEPTIIDGYLYGRGAADMKGSLAAMVVATERFVAKHPNHP 131 Query: 125 GSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVKNGRRGSIT 184 GSI FLITSDEEGPFINGT RV++TL ARNE I +VGEPSSTL +GDVVKNGRRGS+T Sbjct: 132 GSIAFLITSDEEGPFINGTTRVIDTLEARNEKITWALVGEPSSTLKLGDVVKNGRRGSLT 191 Query: 185 GDLKVKGTQGHVAYPHLANNPVHKALPALAELAATQWDEGNAYFPPTSFQIPNLQAGTGA 244 +L VKG QGHVAYPHLA+NP+HKA P LAEL+ T WD GNA+FPPTS QI N+ GTGA Sbjct: 192 ANLTVKGVQGHVAYPHLADNPIHKAAPFLAELSQTHWDNGNAFFPPTSMQIANINGGTGA 251 Query: 245 SNVIPGEFDVQFNFRFSTELTDEEIKRRVHSVLDAHGLDYDVKWTLSGQPFLTDTGELLA 304 SNVIPG +V FNFR+STE+T E + RV ++L AH LDYD++WT +G PFLT G LL Sbjct: 252 SNVIPGALEVMFNFRYSTEVTAEILIERVETLLTAHELDYDIRWTFNGLPFLTGEGPLLD 311 Query: 305 AVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIHKVNECVRIADLEKL 364 A A+ +V TTGGTSDGRFIA GA+V+ELGPVNATIHKVNECV++ DLE+L Sbjct: 312 ATRHAIRQVTGYDTDPQTTGGTSDGRFIAPTGAKVLELGPVNATIHKVNECVKVDDLEQL 371 Query: 365 TDMYQKTLNHLL 376 Y+ L LL Sbjct: 372 ALCYEVILEQLL 383 Lambda K H 0.318 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 533 Number of extensions: 16 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 377 Length of database: 384 Length adjustment: 30 Effective length of query: 347 Effective length of database: 354 Effective search space: 122838 Effective search space used: 122838 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate 201612 SO2471 (succinyl-diaminopimelate desuccinylase (NCBI ptt file))
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))
../bin/blast/fastacmd -i /tmp/list.21860.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21860.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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