Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate 202188 SO3070 aspartate semialdehyde dehydrogenese (NCBI ptt file)
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__MR1:202188 Length = 338 Score = 482 bits (1240), Expect = e-141 Identities = 236/338 (69%), Positives = 271/338 (80%), Gaps = 1/338 (0%) Query: 1 MSQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE 60 MSQ+FNV + GA+GAVG+TM+E+L+ER FPV L+ LAS RS G+T F+GK + + +VE Sbjct: 1 MSQEFNVVVLGASGAVGQTMIEILEERNFPVANLYPLASSRSAGETVSFHGKQITILDVE 60 Query: 61 EFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 120 FDWSQ + FSAGG++SAKWAPIAAEAG VVIDNTSHFRYD DIPLVVPEVNP AIA+ Sbjct: 61 TFDWSQAQLGFFSAGGDVSAKWAPIAAEAGCVVIDNTSHFRYDIDIPLVVPEVNPHAIAD 120 Query: 121 FRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLL 180 FRNRNIIANPNCSTIQMLVALKPIYD GI RINV TYQSVSG GK I+ELA Q KLL Sbjct: 121 FRNRNIIANPNCSTIQMLVALKPIYDTYGISRINVATYQSVSGTGKKAIEELARQCTKLL 180 Query: 181 NGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVP 240 G PAE + +QIAFN +PQID+FMDNGYTKEEMKMVWETQKIF D I+VN T VRVP Sbjct: 181 QGLPAEAEVYPKQIAFNVLPQIDKFMDNGYTKEEMKMVWETQKIFGDDDILVNATAVRVP 240 Query: 241 VFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRGAD-FPTQVRDAGGKDHVLVGRVR 299 VFYGH+EAVH+ETR P DAE + +L +G+ LF D +PT V A G D V VGRVR Sbjct: 241 VFYGHSEAVHIETRQPADAEDIKALLRNAEGVVLFESDDEYPTAVTHAAGTDPVYVGRVR 300 Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELLVRDYF 337 DISH GINLWVV+DN+RKGAA N+VQIAE+LVRDY+ Sbjct: 301 KDISHAHGINLWVVSDNIRKGAALNSVQIAEILVRDYY 338 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 392 Number of extensions: 5 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 338 Length adjustment: 28 Effective length of query: 309 Effective length of database: 310 Effective search space: 95790 Effective search space used: 95790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 202188 SO3070 (aspartate semialdehyde dehydrogenese (NCBI ptt file))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.25398.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25398.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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