Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate GFF3375 HP15_3317 acetylglutamate kinase
Query= BRENDA::Q9HTN2 (301 letters) >FitnessBrowser__Marino:GFF3375 Length = 298 Score = 436 bits (1121), Expect = e-127 Identities = 217/296 (73%), Positives = 257/296 (86%) Query: 1 MTLSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGI 60 M L R+ A QVA VLS LPYI+RF GKT+VIKYGGNAME+E+LK+ FARDVVLMK VGI Sbjct: 1 MALDRETAMQVASVLSRGLPYIQRFTGKTVVIKYGGNAMENEDLKSSFARDVVLMKLVGI 60 Query: 61 NPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHG 120 NP+VVHGGGPQIG+LL+RL+I+S F++GMRVTD+ TMDVVEMVLGGQVNK+IV+LIN HG Sbjct: 61 NPIVVHGGGPQIGELLERLNIQSRFVNGMRVTDSETMDVVEMVLGGQVNKEIVSLINSHG 120 Query: 121 GSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIP 180 G A+GLTGKDA LIRA+KL V ++PE+ +PEIIDIGHVGEV VNV ++ ML + + IP Sbjct: 121 GMAVGLTGKDANLIRARKLEVVDRSPELERPEIIDIGHVGEVASVNVDVIEMLTRSNLIP 180 Query: 181 VIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVN 240 VIAPIGVG +G SYNINADLVAGKVAEA+KAEKLMLLTN++GL K+ +VLTGL+ +QVN Sbjct: 181 VIAPIGVGPDGASYNINADLVAGKVAEAMKAEKLMLLTNVSGLKSKEDKVLTGLTAKQVN 240 Query: 241 ELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLIS 296 +LI DGTI+GGMLPKIRCAL AV+ GV ++HIIDGRV +A LLEIFTD GVGTLIS Sbjct: 241 DLIEDGTIHGGMLPKIRCALSAVENGVRTSHIIDGRVAHACLLEIFTDEGVGTLIS 296 Lambda K H 0.318 0.138 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 368 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 301 Length of database: 298 Length adjustment: 27 Effective length of query: 274 Effective length of database: 271 Effective search space: 74254 Effective search space used: 74254 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate GFF3375 HP15_3317 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))
../bin/blast/fastacmd -i /tmp/list.22317.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22317.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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