GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argB in Marinobacter adhaerens HP15

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate GFF3375 HP15_3317 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>FitnessBrowser__Marino:GFF3375
          Length = 298

 Score =  436 bits (1121), Expect = e-127
 Identities = 217/296 (73%), Positives = 257/296 (86%)

Query: 1   MTLSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGI 60
           M L R+ A QVA VLS  LPYI+RF GKT+VIKYGGNAME+E+LK+ FARDVVLMK VGI
Sbjct: 1   MALDRETAMQVASVLSRGLPYIQRFTGKTVVIKYGGNAMENEDLKSSFARDVVLMKLVGI 60

Query: 61  NPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHG 120
           NP+VVHGGGPQIG+LL+RL+I+S F++GMRVTD+ TMDVVEMVLGGQVNK+IV+LIN HG
Sbjct: 61  NPIVVHGGGPQIGELLERLNIQSRFVNGMRVTDSETMDVVEMVLGGQVNKEIVSLINSHG 120

Query: 121 GSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIP 180
           G A+GLTGKDA LIRA+KL V  ++PE+ +PEIIDIGHVGEV  VNV ++ ML + + IP
Sbjct: 121 GMAVGLTGKDANLIRARKLEVVDRSPELERPEIIDIGHVGEVASVNVDVIEMLTRSNLIP 180

Query: 181 VIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVN 240
           VIAPIGVG +G SYNINADLVAGKVAEA+KAEKLMLLTN++GL  K+ +VLTGL+ +QVN
Sbjct: 181 VIAPIGVGPDGASYNINADLVAGKVAEAMKAEKLMLLTNVSGLKSKEDKVLTGLTAKQVN 240

Query: 241 ELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLIS 296
           +LI DGTI+GGMLPKIRCAL AV+ GV ++HIIDGRV +A LLEIFTD GVGTLIS
Sbjct: 241 DLIEDGTIHGGMLPKIRCALSAVENGVRTSHIIDGRVAHACLLEIFTDEGVGTLIS 296


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 368
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 298
Length adjustment: 27
Effective length of query: 274
Effective length of database: 271
Effective search space:    74254
Effective search space used:    74254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate GFF3375 HP15_3317 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.22317.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22317.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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