Align Succinylornithine transaminase (EC 2.6.1.81) (characterized)
to candidate GFF3099 HP15_3042 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
Query= reanno::WCS417:GFF4238 (406 letters) >FitnessBrowser__Marino:GFF3099 Length = 404 Score = 537 bits (1383), Expect = e-157 Identities = 262/403 (65%), Positives = 320/403 (79%), Gaps = 1/403 (0%) Query: 3 VEQAPVQRADFDQVMVPNYAPAAFIPVRGEGSRVWDQAGRELIDFAGGIAVNVLGHAHPA 62 + + PV R FD+VMVPNYAP + IPVRGEGSR+WDQ GRE ID GGIAV LGH+HP Sbjct: 1 MNKEPVSRELFDEVMVPNYAPGSIIPVRGEGSRIWDQEGREFIDLQGGIAVTCLGHSHPG 60 Query: 63 LVGALTEQAHKLWHVSNVFTNEPALRLAHKLIDATFAERVFFCNSGAEANEAAFKLARRV 122 LVGAL +QA K+WH+SNV TNEPALRLA L D TFAERVFF NSGAEANEAAFKLARR Sbjct: 61 LVGALHDQAEKIWHLSNVMTNEPALRLAKTLCDLTFAERVFFANSGAEANEAAFKLARRY 120 Query: 123 AFDRFGSEKYEIIAALNSFHGRTLFTVNVGGQSKYSDGFGPKITGITHVPYNDLDALKAA 182 A++ G EK EII+ NSFHGRTLFTV+VGGQ KY +GF P GI H +NDL+++K Sbjct: 121 AWEHHGKEKNEIISFKNSFHGRTLFTVSVGGQPKYLEGFEPAPGGIHHAEFNDLESVKKL 180 Query: 183 VS-DKTCAVVLEPIQGEGGVLPAELAYLQGARDLCDANNALLVFDEVQTGMGRSGHLFAY 241 +S +KTCA+V+EPIQGEGGV+P + A+LQG RDLCD N+ALLVFDEVQ+G+GRSGH +AY Sbjct: 181 ISKEKTCAIVVEPIQGEGGVMPGDQAFLQGLRDLCDENDALLVFDEVQSGVGRSGHFYAY 240 Query: 242 QHYGVTPDILTSAKSLGGGFPIAAMLTTEALAKHLVVGTHGTTYGGNPLACAVAEAVIDV 301 Q YGV PDIL+SAK LGGGFP+AAMLTT +A L VGTHG+TYGGN LACAVA+ V+D Sbjct: 241 QMYGVVPDILSSAKGLGGGFPVAAMLTTAKVAASLGVGTHGSTYGGNALACAVAQRVVDT 300 Query: 302 INTPEVLAGVNAKHDLFKARLEQIGKQYGIFTEVRGMGLLLGCVLSDAFKGKAKDVFNAA 361 ++ PE+L GV A+ D + + IG++YG+FTEVRG GLLLGCVL++ ++GKAKD NA Sbjct: 301 VSQPEILKGVKARSDKLRKGMMDIGERYGVFTEVRGAGLLLGCVLTEKWQGKAKDFLNAG 360 Query: 362 EKENLMILQAGPDVVRFAPSLVVEDADIKEGLDRFERAVKALT 404 +E +M+L AG +V+R APSL++ + DI+ L+RFE AVK LT Sbjct: 361 LEEGVMVLVAGANVIRLAPSLIIPEPDIELALERFEAAVKKLT 403 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 522 Number of extensions: 13 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 406 Length of database: 404 Length adjustment: 31 Effective length of query: 375 Effective length of database: 373 Effective search space: 139875 Effective search space used: 139875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate GFF3099 HP15_3042 (bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein)
to HMM TIGR03246 (astC: succinylornithine transaminase family (EC 2.6.1.81))
../bin/blast/fastacmd -i /tmp/list.22934.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22934.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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