Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate GFF3373 HP15_3315 acetylornithine deacetylase (ArgE)
Query= ecocyc::ACETYLORNDEACET-MONOMER (383 letters) >FitnessBrowser__Marino:GFF3373 Length = 389 Score = 372 bits (955), Expect = e-108 Identities = 189/378 (50%), Positives = 249/378 (65%), Gaps = 1/378 (0%) Query: 5 LPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRNKFNM 64 +P ++ LI+ PSIS+ D SN ++ LA+W + LGF+VE+ VPG KFN+ Sbjct: 11 VPGIRDMLARLISLPSISSASAKWDHSNEPVVRTLAEWLEALGFSVEILEVPGMPGKFNL 70 Query: 65 LASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDAL 124 + ++G G GGL+L+GHTDTVPFDD RW DPFTLTE D + YGLGT DMKGFF ++A Sbjct: 71 IGTLGSGPGGLVLSGHTDTVPFDDKRWQSDPFTLTERDNRWYGLGTCDMKGFFPLAIEAA 130 Query: 125 RDVDVTKLKKPLYILATADEETSMAGARYFAETTALRPDCAIIGEPTSLQPVRAHKGHIS 184 R LK+PL ILATADEE+SM GAR AE + A+IGEPTSL+PVR HKG + Sbjct: 131 RAFVDEDLKQPLIILATADEESSMDGARALAEAGKPKARYAVIGEPTSLKPVRMHKGIMM 190 Query: 185 NAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPTLNLGHI 244 ++ +GQSGHSS+PA G NA+E MH+A+ +L LR +E+Y F V +PTLNLG I Sbjct: 191 ERLKFEGQSGHSSNPALGRNAMEGMHEALTELLALRSGWQEKYRNPNFEVQFPTLNLGCI 250 Query: 245 HGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDELHPPIPG 304 HGGD NRICA CELH D+RPLPGM + L + + P+++R L + L +P Sbjct: 251 HGGDNPNRICAQCELHFDLRPLPGMNMETLRQAILSKVQPIADRRELSLEFEPLFDGVPP 310 Query: 305 YECPPNHQLVEVVEKLLGAKTEVVNYCTEAPFIQTL-CPTLVLGPGSINQAHQPDEYLET 363 +E P + LV+ EKL G V + TEAP++Q L TLV+GPGSI+QAHQPDE++E Sbjct: 311 FETPADAALVKACEKLTGHTAHAVAFATEAPWLQKLGLETLVMGPGSIDQAHQPDEFIEL 370 Query: 364 RFIKPTRELITQVIHHFC 381 I PT +++ +I FC Sbjct: 371 SQIDPTVKVLRGLIRQFC 388 Lambda K H 0.320 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 440 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 383 Length of database: 389 Length adjustment: 30 Effective length of query: 353 Effective length of database: 359 Effective search space: 126727 Effective search space used: 126727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate GFF3373 HP15_3315 (acetylornithine deacetylase (ArgE))
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))
../bin/blast/fastacmd -i /tmp/list.16424.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16424.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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