Align glutamyl-tRNAGln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate GFF2514 HP15_2458 aspartyl/glutamyl-tRNA amidotransferase subunit B
Query= metacyc::MONOMER-13956 (476 letters) >FitnessBrowser__Marino:GFF2514 Length = 483 Score = 421 bits (1081), Expect = e-122 Identities = 221/481 (45%), Positives = 314/481 (65%), Gaps = 8/481 (1%) Query: 1 MNFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAM 60 M ++ VIGLE+HV+L TK+KIFS S T +GAE NTQ + +DL PG LPV N++A +A+ Sbjct: 1 MQWDIVIGLEIHVQLATKTKIFSGSSTAYGAEPNTQANAVDLAMPGTLPVPNEQAFRYAV 60 Query: 61 KAAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEV-GGKTKRIGIT 119 +A+N EI + F+RKNYFYPD PK YQ +Q ++PI G+++I++ G+TKR+ I Sbjct: 61 MFGLAVNAEIERRSVFERKNYFYPDLPKGYQTTQLERPIVGPGFVDIDLPNGETKRVRIH 120 Query: 120 RLHLEEDAGKLTHTG-DGYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQYT 178 HLEEDAGK H G + VD NR GTPL+E+V+EPD+ EEA A+ +KL SI+ Sbjct: 121 HAHLEEDAGKSLHEDFHGMTGVDLNRAGTPLIEVVTEPDMNNAEEAVAFAKKLHSIVTSL 180 Query: 179 GVSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSFAFVQKGLEHEEKRQEQVLLS 238 G+ D M +GS+R D NISL+P G + GT+TE KNLNSF F+++ + HE +RQ +L Sbjct: 181 GICDGDMSQGSMRFDVNISLKPKGSDTLGTRTETKNLNSFRFMEQAIAHEVERQMDILED 240 Query: 239 GFFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVKASIPELPD 298 G I QETR Y+ ++ MR KE ++DYRYFP PDL+ + IDD + E + S+PELPD Sbjct: 241 GGNIVQETRLYNGDRDESRSMRTKEEANDYRYFPCPDLLPVEIDDSFIEEARNSLPELPD 300 Query: 299 ERRKRYIEELGFAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQK 358 R+ R++E+ G YDA +L+ ++A FFEE +G +AK +NW+ GE SA LNAE+K Sbjct: 301 ARKARFMEQYGLNDYDAGLLSGDSKLATFFEEAASQGKDAKLVANWIQGEFSARLNAEEK 360 Query: 359 ELADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIEKGGDA-EKIVKEKGLVQISDEG 417 +AD ++ L ++ I TISS AKKVF+ L D+ + I+ KGL Q+SD G Sbjct: 361 SVADSPISGAQLGDLVVRIADNTISSAGAKKVFEALWSGENDSVDAIIDAKGLKQVSDTG 420 Query: 418 VLLKLVTEALDNNPQSIEDFKNGKD-----RAIGFLVGQIMKASKGQANPPMVNKILLEE 472 L +V E L P + ++N +D + +G +G +MKASKGQ NP + N+IL+ + Sbjct: 421 ALEAMVDEVLAGMPDQVAQYQNEEDPKKRKKMLGGFMGPLMKASKGQGNPKLFNEILVRK 480 Query: 473 I 473 + Sbjct: 481 L 481 Lambda K H 0.314 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 620 Number of extensions: 29 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 476 Length of database: 483 Length adjustment: 34 Effective length of query: 442 Effective length of database: 449 Effective search space: 198458 Effective search space used: 198458 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 51 (24.3 bits)
Align candidate GFF2514 HP15_2458 (aspartyl/glutamyl-tRNA amidotransferase subunit B)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.5554.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5554.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.