Align Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 (characterized)
to candidate GFF1881 HP15_1838 chorismate synthase
Query= SwissProt::P12008 (361 letters) >FitnessBrowser__Marino:GFF1881 Length = 364 Score = 523 bits (1347), Expect = e-153 Identities = 252/359 (70%), Positives = 301/359 (83%) Query: 1 MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR 60 M+GN+ G+LF VT+FGESHG ALGCI+DG PPG+ L+EAD+Q DLDRR+PGTSR+TTQRR Sbjct: 1 MSGNSFGKLFTVTSFGESHGPALGCIIDGCPPGLELSEADMQRDLDRRKPGTSRHTTQRR 60 Query: 61 EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY 120 E D+V+ILSGVFEG TTGT IGLLIENTDQRS+DYS I + FRP HADYTY KYG+RDY Sbjct: 61 EADEVRILSGVFEGKTTGTPIGLLIENTDQRSKDYSKISEQFRPAHADYTYMHKYGVRDY 120 Query: 121 RGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDIPLDIKDWSQVEQNPFFC 180 RGGGRSSARETAMRVAAGA+A+K+L ++ GI IRG L+Q+G I + DW QV QNPFFC Sbjct: 121 RGGGRSSARETAMRVAAGAVARKFLEQRLGIRIRGYLSQLGPIKAEKLDWDQVHQNPFFC 180 Query: 181 PDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV 240 PD DK+ ++ M AL+KEGDSIGA++ VVA GVP GLGEP+FDRLDAD+AHALMSINAV Sbjct: 181 PDADKVPEMEAYMDALRKEGDSIGARINVVADGVPPGLGEPIFDRLDADLAHALMSINAV 240 Query: 241 KGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIIAHMALKPTSSITV 300 KGVEIG GFD + +G+++RDE+T +GF SN+AGG+LGGISSGQ I+A +ALKPTSS+ + Sbjct: 241 KGVEIGAGFDCIDQKGTEHRDEMTPEGFLSNNAGGVLGGISSGQPIVASIALKPTSSLRL 300 Query: 301 PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQNADVKTDIP 359 GR+I+ G+ E+IT GRHDPCVGIRA PIAEAM+AIVLMDH LR R QNADV P Sbjct: 301 SGRSIDVNGDPCEVITTGRHDPCVGIRATPIAEAMMAIVLMDHYLRHRGQNADVSVSTP 359 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 474 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 361 Length of database: 364 Length adjustment: 29 Effective length of query: 332 Effective length of database: 335 Effective search space: 111220 Effective search space used: 111220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate GFF1881 HP15_1838 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))
../bin/blast/fastacmd -i /tmp/list.32614.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32614.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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