Align glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) (characterized)
to candidate GFF2513 HP15_2457 glutamyl-tRNA (Gln) amidotransferase A subunit
Query= metacyc::MONOMER-13955 (485 letters) >FitnessBrowser__Marino:GFF2513 Length = 485 Score = 512 bits (1319), Expect = e-150 Identities = 259/486 (53%), Positives = 342/486 (70%), Gaps = 5/486 (1%) Query: 3 LFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAV 62 + + + EL + + +I +L E RI+ D K +F+ + EE+A A A+ DE Sbjct: 1 MHNKSVAELSRELESGKISSVELTQEFLDRIKREDSKYNSFITVTEEQALADARVADEQR 60 Query: 63 DGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKL 122 + G+P KD T G+RTTC SK+LENF P YDATV ++A AV +GK Sbjct: 61 AAGNATPWT-GVPFAHKDIFCTNGVRTTCGSKMLENFVPPYDATVTANFREAGAVCLGKT 119 Query: 123 NMDEFAMGSSTENSAYKLTKNPWNLDT----VPGGSSGGSAAAVAAGEVPFSLGSDTGGS 178 NMDEFAMGSS ENS + NPW L VPGGSSGGSAAAVAA +P + +DTGGS Sbjct: 120 NMDEFAMGSSNENSYFGAVTNPWGLSEGNKRVPGGSSGGSAAAVAARLIPAATATDTGGS 179 Query: 179 IRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDS 238 IRQPA+ CGV GLKPTYGRVSRYG++AFASSLDQ G + RT EDNA +L ++G D DS Sbjct: 180 IRQPAALCGVTGLKPTYGRVSRYGMIAFASSLDQGGTMARTAEDNALMLNVMAGFDPKDS 239 Query: 239 TSANVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVS 298 TS + +VPD+ ++L +KGL+I +P+EY + + + V A+K E LGAT +EVS Sbjct: 240 TSIDREVPDYTATLNEPLKGLRIGLPREYFSDQLSPAMEQQVRNAVKEYEKLGATVKEVS 299 Query: 299 LPHSKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRR 358 LP++K A+A YY+++ +EASANL+RFDG+RYGYR +N +L+DLY ++RAEGFG EVKRR Sbjct: 300 LPNAKLAIAAYYVIAPAEASANLSRFDGVRYGYRCENPKDLMDLYTRSRAEGFGEEVKRR 359 Query: 359 IMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDP 418 I++GT+ALS+GY+DAYY KAQKVR LI++DF + F++ DV++ PTTP+PAF GE T DP Sbjct: 360 ILVGTYALSAGYFDAYYLKAQKVRRLIQQDFINAFKEVDVLMSPTTPSPAFIQGEKTSDP 419 Query: 419 LTMYANDILTIPVNLAGVPGISVPCGLADGLPLGLQIIGKHFDESTVYRVAHAFEQATDH 478 +TMY D+ TI +NLAGVP +SVP G DGLP+GLQIIG +F E+ + AH F+Q TD Sbjct: 420 VTMYLEDVFTIAINLAGVPAMSVPAGFVDGLPVGLQIIGDYFSEARLLNAAHQFQQVTDW 479 Query: 479 HKAKPE 484 H+ KP+ Sbjct: 480 HQRKPQ 485 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 574 Number of extensions: 19 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 485 Length adjustment: 34 Effective length of query: 451 Effective length of database: 451 Effective search space: 203401 Effective search space used: 203401 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate GFF2513 HP15_2457 (glutamyl-tRNA (Gln) amidotransferase A subunit)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.9148.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9148.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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