Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate GFF3065 HP15_3009 protein containing histidine biosynthesis, HisF domain
Query= SwissProt::Q7SIB9 (252 letters) >FitnessBrowser__Marino:GFF3065 Length = 257 Score = 306 bits (784), Expect = 3e-88 Identities = 157/256 (61%), Positives = 198/256 (77%), Gaps = 6/256 (2%) Query: 1 MSLAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEER 60 M+LAKRI+PCLDV GRVVKGVNFV++RDAGDPVE AR Y+E GADE+ FLDI+A+HE R Sbjct: 1 MALAKRIIPCLDVDKGRVVKGVNFVDIRDAGDPVEVARRYNEQGADEITFLDITASHESR 60 Query: 61 AILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADH 120 + V R+A VFIPLTVGGGVR+++D RKLL +GADKVS+N+AAV PE +RE AD Sbjct: 61 DTTYETVERMAAEVFIPLTVGGGVRTVDDIRKLLNAGADKVSINTAAVFNPEFVREAADR 120 Query: 121 FGAQAVVLAIDAR---WRGDFP--EVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMD 175 FG+Q +V+AIDA+ G+ P E+ GGR PTGL AVEWA K VE+GAGE+LLTSMD Sbjct: 121 FGSQCIVVAIDAKRVSEEGEEPRWEIFTHGGRKPTGLDAVEWARKMVEMGAGELLLTSMD 180 Query: 176 RDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF-QAGAEAALAASVFHFGEIP 234 RDGTK G+DL LT+ +++AV VPVIASGG G ++H + Q GA+A LAAS+FHFG+ Sbjct: 181 RDGTKIGFDLGLTKAISDAVIVPVIASGGVGELQHLADGVTQGGADAVLAASIFHFGQHT 240 Query: 235 IPKLKRYLAEKGVHVR 250 IP+ K ++ +G+ VR Sbjct: 241 IPEAKAFMKAQGIEVR 256 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 246 Number of extensions: 10 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 252 Length of database: 257 Length adjustment: 24 Effective length of query: 228 Effective length of database: 233 Effective search space: 53124 Effective search space used: 53124 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate GFF3065 HP15_3009 (protein containing histidine biosynthesis, HisF domain)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.3078.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3078.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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