Align acetolactate synthase isozyme 2 large subunit; EC 2.2.1.6 (characterized)
to candidate GFF1038 HP15_1017 acetolactate synthase, large subunit, biosynthetic type
Query= CharProtDB::CH_003896 (548 letters) >FitnessBrowser__Marino:GFF1038 Length = 566 Score = 580 bits (1496), Expect = e-170 Identities = 297/555 (53%), Positives = 385/555 (69%), Gaps = 11/555 (1%) Query: 1 MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDG-GVEHLLCRHEQGAAMAAIGYAR 59 MNGAQ ++ A ++TVFGYPGG IMP+YDAL D GVEH+LCRHEQG A+AA GYAR Sbjct: 1 MNGAQHILEAFHRHNISTVFGYPGGCIMPLYDALVDDVGVEHVLCRHEQGCALAADGYAR 60 Query: 60 ATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSL 119 A+GK GVCIATSGPGATNLITG+A+A DSIP++ ITGQV + IGTDAFQE DVLG++L Sbjct: 61 ASGKLGVCIATSGPGATNLITGVANAHRDSIPMLVITGQVPSGLIGTDAFQETDVLGMTL 120 Query: 120 ACTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASGDLEPWFTTVENEV 179 KHS+L+ + LP IM EA ++A SGRPGPV +DIPKD+ L+ P+ E Sbjct: 121 GIVKHSYLINDADSLPIIMEEAIELAQSGRPGPVWIDIPKDLLLSDVADAPFPQAQPYEP 180 Query: 180 TFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGLGAVEA 239 P ++++A ML A+KP+LY GGG+ + A R F ++ +PA TLKG+G Sbjct: 181 ASP--DLKEALAMLRAARKPLLYSGGGISLGHAEENFRAFAESSALPAVVTLKGIGNPGK 238 Query: 240 DYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMDIDPAE 299 PY LGMLGMHG++AAN AV ECDLL+ +GAR DDR TGKL+ FAP+A +IH+D D AE Sbjct: 239 HNPYNLGMLGMHGSRAANKAVDECDLLLVIGARLDDRATGKLDGFAPNARMIHIDADAAE 298 Query: 300 MNKLRQAHVALQGDLNALLPALQ-----QPLNQYDWQQHCAQLRDE---HSWRYDHPGDA 351 +NKLR A +A++GDLN +L +L PL +WQ+ C H+ + P Sbjct: 299 INKLRDADLAIRGDLNHILKSLAGELHADPLAISEWQKQCRSWYTTGGFHAADNEEPLAP 358 Query: 352 IYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPENFITSSGLGTMGFGLPAAV 411 I P ++QLS P D V+ DVGQHQMW AQH P + +TS GLGTMGFGLPAA+ Sbjct: 359 ITGPAFIRQLSRIAPDDTVIACDVGQHQMWVAQHYDFDHPRHHLTSGGLGTMGFGLPAAI 418 Query: 412 GAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQE 471 GAQ A N TV+ ++GDGSFMMN QEL T++R LP+K++++DNQ LGMVRQ Q+LF+ Sbjct: 419 GAQFADRNSTVINVTGDGSFMMNAQELATIRRYNLPVKLIVMDNQCLGMVRQQQELFYNN 478 Query: 472 RYSETTLTDNPDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVW 531 R S+ L DNPDF+ +A AF I +I R DQ+ ++T+L +GP LLHV+I ENVW Sbjct: 479 RESQINLDDNPDFVAMARAFDIPALYIERTDQIRRGIETILAYNGPMLLHVAISREENVW 538 Query: 532 PLVPPGASNSEMLEK 546 P+V PGASN++M+++ Sbjct: 539 PIVKPGASNTDMIDE 553 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 878 Number of extensions: 33 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 548 Length of database: 566 Length adjustment: 36 Effective length of query: 512 Effective length of database: 530 Effective search space: 271360 Effective search space used: 271360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate GFF1038 HP15_1017 (acetolactate synthase, large subunit, biosynthetic type)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.31845.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31845.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.