Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate GFF555 HP15_538 2-isopropylmalate synthase
Query= BRENDA::Q9JZG1 (517 letters) >FitnessBrowser__Marino:GFF555 Length = 516 Score = 649 bits (1675), Expect = 0.0 Identities = 321/500 (64%), Positives = 399/500 (79%) Query: 1 MTQTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAV 60 M T+ ++IFDTTLRDGEQSPGA M K EK+R+A+ LEKL VD+IEAGFA AS GDFEAV Sbjct: 1 MPATDHLVIFDTTLRDGEQSPGATMNKAEKLRIAKALEKLRVDVIEAGFAIASQGDFEAV 60 Query: 61 NAIAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQV 120 AIA++I ST+CSL+RA+++DI +A EA+ PA + RIHTFIATSPIHM++KL+M+P +V Sbjct: 61 KAIAESIKDSTICSLARALDKDIDRAAEAIRPAQRGRIHTFIATSPIHMKHKLQMQPDEV 120 Query: 121 IEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPY 180 IE AV++VK AR + DDVEFSCEDA RSE+DFL I A I+AGA+TINIPDTVGY+IP Sbjct: 121 IEQAVRSVKRARSHVDDVEFSCEDAGRSELDFLCRIIEAAIDAGASTINIPDTVGYAIPE 180 Query: 181 KTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGN 240 + E R+L+ + PN K ++S HCHNDLGLAV+NSLAA+ GARQVECT+NGLGERAGN Sbjct: 181 QFGETIRQLLNRIPNADKAIFSVHCHNDLGLAVSNSLAAVSQGARQVECTINGLGERAGN 240 Query: 241 ASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESG 300 A++EEIVMA++ R DLF ++T ID IVP+S+LVSTITG+PVQPNKAIVGANAF+HESG Sbjct: 241 AALEEIVMAVRTRQDLFHIDTRIDAQHIVPASRLVSTITGFPVQPNKAIVGANAFAHESG 300 Query: 301 IHQDGVLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAF 360 IHQDGVLKHRETYEIM A+ VGW TN L LGK SGRNAF+T+L +LGI+ E+E LN AF Sbjct: 301 IHQDGVLKHRETYEIMRAQDVGWHTNSLVLGKHSGRNAFRTRLLELGIQFETETELNEAF 360 Query: 361 ARFKELADKKREIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGE 420 RFK LAD K EIFDEDL A+ SD Y + ++ +ETG P+A++ S+ G+ Sbjct: 361 TRFKALADLKHEIFDEDLQAIASDTRQKEEDGRYGLVCMQVCSETGVVPKANLTLSVDGK 420 Query: 421 EKRASATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNG 480 E + A GSGPVDA FKAIES+ SG LQ+YSVN +T GT++QGE +VRL RG R+VNG Sbjct: 421 EHKVEAEGSGPVDATFKAIESLVDSGCNLQLYSVNNITSGTDAQGEVTVRLERGGRIVNG 480 Query: 481 QGADTDVLVATAKAYLSALS 500 GADTD+++A+AKAY+ AL+ Sbjct: 481 VGADTDIIIASAKAYIEALN 500 Lambda K H 0.313 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 677 Number of extensions: 25 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 517 Length of database: 516 Length adjustment: 35 Effective length of query: 482 Effective length of database: 481 Effective search space: 231842 Effective search space used: 231842 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 52 (24.6 bits)
Align candidate GFF555 HP15_538 (2-isopropylmalate synthase)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))
../bin/blast/fastacmd -i /tmp/list.11498.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11498.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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