Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate GFF2655 HP15_2599 isopropylmalate isomerase large subunit
Query= CharProtDB::CH_024771 (466 letters) >FitnessBrowser__Marino:GFF2655 Length = 469 Score = 546 bits (1406), Expect = e-160 Identities = 276/469 (58%), Positives = 347/469 (73%), Gaps = 7/469 (1%) Query: 2 AKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGR-PVRQPGKTFAT 60 A+TLY+KL+ H+V E + + LLYIDRHL+HEVT+PQAF GLR+ GR P R P A Sbjct: 3 ARTLYDKLWQRHLVDELPDGSALLYIDRHLLHEVTTPQAFSGLRSAGRKPWRIPANV-AV 61 Query: 61 MDHNVSTQTKDINACG---EMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGV 117 DH V T+ +++ G +AR Q++ L +NC+EFG+ L +L QGIVHV+GPEQG+ Sbjct: 62 PDHAVPTRKRELGVAGIADRVARKQVETLSRNCEEFGIPLIELEDARQGIVHVVGPEQGL 121 Query: 118 TLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPG 177 TLPGMTIVCGDSHT+THGAF LA GIGTSEVEHVLATQTL+ + K M++ +G+ G Sbjct: 122 TLPGMTIVCGDSHTSTHGAFATLAMGIGTSEVEHVLATQTLRTQKQKNMRVVFEGQPGFG 181 Query: 178 ITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDE 237 +T KD++LA+IG+ G+AGG G+ +E+ G AIR+LSMEGRMT+CNM+IE GA+AG+VA D Sbjct: 182 VTPKDLILALIGRIGTAGGNGYAIEYAGAAIRNLSMEGRMTICNMSIEAGARAGMVAYDR 241 Query: 238 TTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQV 297 T YV+GR AP G+ + A YW+TL +D A FD E + PQVTWGT+P V Sbjct: 242 VTEQYVEGRPQAPVGERLEQAREYWRTLVSDAEADFDREEHFPLEALVPQVTWGTSPEMV 301 Query: 298 ISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRA 357 ++ PD + A P +R SA +AL YMGL+PG PL ++IDKVFIGSCTN+R+EDLRA Sbjct: 302 TGIDGKTPDLSQLA-PEKRESARRALDYMGLEPGRPLKGLSIDKVFIGSCTNARMEDLRA 360 Query: 358 AAEIAKGRKVAPGV-QALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNND 416 A + +G+KV V QAL+VPGSG V+ QAE EGLD IF AGFEWR GCSMCL MN+D Sbjct: 361 VANLVQGQKVHRSVKQALIVPGSGQVRLQAEREGLDMIFRNAGFEWRAAGCSMCLGMNDD 420 Query: 417 RLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNI 465 RLNPGERCASTSNRNFEGRQG+GGRTHL+SP MAAAAA+ G D+R + Sbjct: 421 RLNPGERCASTSNRNFEGRQGKGGRTHLMSPLMAAAAALAGEITDVREV 469 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 707 Number of extensions: 27 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 469 Length adjustment: 33 Effective length of query: 433 Effective length of database: 436 Effective search space: 188788 Effective search space used: 188788 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate GFF2655 HP15_2599 (isopropylmalate isomerase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.22555.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22555.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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