GapMind for Amino acid biosynthesis

 

Alignments for a candidate for asd in Marinobacter adhaerens HP15

Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate GFF1874 HP15_1831 aspartate-semialdehyde dehydrogenase

Query= SwissProt::Q51344
         (370 letters)



>FitnessBrowser__Marino:GFF1874
          Length = 360

 Score =  521 bits (1343), Expect = e-153
 Identities = 252/360 (70%), Positives = 302/360 (83%), Gaps = 1/360 (0%)

Query: 12  MVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKD-IAPLKDAYSIDELKTLDVIL 70
           MVGSVLMQRM EE DF  IEPVFFTTS  G   P+VGKD + PL+DA+ ++ LKT+DVI+
Sbjct: 1   MVGSVLMQRMREENDFADIEPVFFTTSQAGKPAPDVGKDDVPPLQDAFDVEILKTMDVIV 60

Query: 71  TCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVIDQALDAGTRNY 130
           TCQGGDYT  V+ KLR+AGW+GYWIDAAS+LRM D +VIVLDPVNR VID AL+ G ++Y
Sbjct: 61  TCQGGDYTGAVYQKLRDAGWEGYWIDAASTLRMVDHSVIVLDPVNRNVIDAALEKGVKDY 120

Query: 131 IGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMGAAHASVADDL 190
           IGGNCTVSLM++ALGGL +  L+EW+S MTYQAASG+GAQNMRELL QMG  + SV  +L
Sbjct: 121 IGGNCTVSLMMLALGGLLEQDLIEWVSPMTYQAASGSGAQNMRELLNQMGELNKSVKSEL 180

Query: 191 ANPASAILDIDRKVAETLRSEAFPTEHFGAPLGGSLIPWIDKELPNGQSREEWKAQAETN 250
            +P+SAIL+IDRKV ET+RS+ FPTEHF  PL GSLIP+IDK+L NG S+EEWKA  ETN
Sbjct: 181 DDPSSAILEIDRKVTETMRSDGFPTEHFQVPLAGSLIPFIDKQLDNGMSKEEWKAGVETN 240

Query: 251 KILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQHNPWVKLVPNHR 310
           KIL R  NPIP+DGICVR+GAMR HSQALTIKL KD+P+++IE ++++ N WVK++PN R
Sbjct: 241 KILGRSDNPIPIDGICVRIGAMRSHSQALTIKLKKDLPVSEIESILAKANDWVKVIPNDR 300

Query: 311 EVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEPLRRMLRILLER 370
           + ++ ELTPA VTGTLSVPVGR+RKL MG +Y+ AFTVGDQLLWGAAEPLRRMLRIL ER
Sbjct: 301 DATIEELTPAKVTGTLSVPVGRIRKLTMGPEYISAFTVGDQLLWGAAEPLRRMLRILQER 360


Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 494
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 360
Length adjustment: 30
Effective length of query: 340
Effective length of database: 330
Effective search space:   112200
Effective search space used:   112200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate GFF1874 HP15_1831 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.16084.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16084.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.