Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate GFF1874 HP15_1831 aspartate-semialdehyde dehydrogenase
Query= SwissProt::Q51344 (370 letters) >FitnessBrowser__Marino:GFF1874 Length = 360 Score = 521 bits (1343), Expect = e-153 Identities = 252/360 (70%), Positives = 302/360 (83%), Gaps = 1/360 (0%) Query: 12 MVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKD-IAPLKDAYSIDELKTLDVIL 70 MVGSVLMQRM EE DF IEPVFFTTS G P+VGKD + PL+DA+ ++ LKT+DVI+ Sbjct: 1 MVGSVLMQRMREENDFADIEPVFFTTSQAGKPAPDVGKDDVPPLQDAFDVEILKTMDVIV 60 Query: 71 TCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVIDQALDAGTRNY 130 TCQGGDYT V+ KLR+AGW+GYWIDAAS+LRM D +VIVLDPVNR VID AL+ G ++Y Sbjct: 61 TCQGGDYTGAVYQKLRDAGWEGYWIDAASTLRMVDHSVIVLDPVNRNVIDAALEKGVKDY 120 Query: 131 IGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMGAAHASVADDL 190 IGGNCTVSLM++ALGGL + L+EW+S MTYQAASG+GAQNMRELL QMG + SV +L Sbjct: 121 IGGNCTVSLMMLALGGLLEQDLIEWVSPMTYQAASGSGAQNMRELLNQMGELNKSVKSEL 180 Query: 191 ANPASAILDIDRKVAETLRSEAFPTEHFGAPLGGSLIPWIDKELPNGQSREEWKAQAETN 250 +P+SAIL+IDRKV ET+RS+ FPTEHF PL GSLIP+IDK+L NG S+EEWKA ETN Sbjct: 181 DDPSSAILEIDRKVTETMRSDGFPTEHFQVPLAGSLIPFIDKQLDNGMSKEEWKAGVETN 240 Query: 251 KILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQHNPWVKLVPNHR 310 KIL R NPIP+DGICVR+GAMR HSQALTIKL KD+P+++IE ++++ N WVK++PN R Sbjct: 241 KILGRSDNPIPIDGICVRIGAMRSHSQALTIKLKKDLPVSEIESILAKANDWVKVIPNDR 300 Query: 311 EVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEPLRRMLRILLER 370 + ++ ELTPA VTGTLSVPVGR+RKL MG +Y+ AFTVGDQLLWGAAEPLRRMLRIL ER Sbjct: 301 DATIEELTPAKVTGTLSVPVGRIRKLTMGPEYISAFTVGDQLLWGAAEPLRRMLRILQER 360 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 494 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 360 Length adjustment: 30 Effective length of query: 340 Effective length of database: 330 Effective search space: 112200 Effective search space used: 112200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate GFF1874 HP15_1831 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.16084.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16084.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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