Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate 8501230 DvMF_1964 phosphoribosyl-AMP cyclohydrolase (RefSeq)
Query= SwissProt::O26347 (138 letters) >FitnessBrowser__Miya:8501230 Length = 133 Score = 123 bits (308), Expect = 1e-33 Identities = 64/115 (55%), Positives = 82/115 (71%), Gaps = 5/115 (4%) Query: 23 LIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDV 82 L+ A+AQ TGEVLM+A+MN EA TL TG AHY+S SRG+LW KG +SGH Q +K V Sbjct: 21 LVPAIAQCAATGEVLMMAWMNEEAWDATLATGEAHYFSRSRGRLWHKGGTSGHTQHIKAV 80 Query: 83 LVDCDGDAVVLKVEQEG-GACHTGYRSCFYRSI-DGDELKVREDAVKVFDPEEIY 135 +DCD D V+L V+Q+G ACH GYRSCFYR + DG + + +VFDP+E+Y Sbjct: 81 RLDCDSDTVLLLVDQKGDAACHEGYRSCFYRELKDGAPVIC---SPRVFDPKEVY 132 Lambda K H 0.318 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 92 Number of extensions: 6 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 138 Length of database: 133 Length adjustment: 15 Effective length of query: 123 Effective length of database: 118 Effective search space: 14514 Effective search space used: 14514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate 8501230 DvMF_1964 (phosphoribosyl-AMP cyclohydrolase (RefSeq))
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.13364.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13364.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.