Align dihydroxy-acid dehydratase (EC 4.2.1.9) (characterized)
to candidate 8501301 DvMF_2034 dihydroxy-acid dehydratase (RefSeq)
Query= BRENDA::Q97UB2 (558 letters) >FitnessBrowser__Miya:8501301 Length = 555 Score = 456 bits (1173), Expect = e-132 Identities = 244/555 (43%), Positives = 345/555 (62%), Gaps = 4/555 (0%) Query: 5 LNSPSRYHGIYNAPHRAFLRSVGLTDEEIGKPLVAIATAWSEAGPCNFHTLALARVAKEG 64 + S HG+ APHR+ L ++GLT EEI +PLV + A +E P + H +A K G Sbjct: 1 MRSKKMTHGLEKAPHRSLLHALGLTREEIERPLVGVVNAANEVVPGHVHLHTIAEAVKAG 60 Query: 65 TKEAGLSPLAFPTMVVNDNIGMGSEGMRYSLVSRDLIADMVEAQFNAHAFDGLVGIGGCD 124 + AG +P+ FP + V D + M EGM +SL SR++IAD +E AH FD LV I CD Sbjct: 61 VRAAGGTPMEFPAIAVCDGLAMNHEGMHFSLPSREIIADSIEIMATAHPFDALVFIPNCD 120 Query: 125 KTTPGILMAMARLNVPSIYIYGGSAEPGYFMGKRLTIEDVHEAIGAYLAKRITENELYEI 184 K+ PG+LMAM R+++PSI + GG G + R + V EA+G +T EL E+ Sbjct: 121 KSVPGMLMAMLRMDIPSIMVSGGPMLAGGTLAGRTDLISVFEAVGRVQRGDMTMAELDEM 180 Query: 185 EKRAHPTLGTCSGLFTANTMGSMSEALGMALPGSASPTATSSRRVMYVKETGKALGSLIE 244 + A P G+C+G+FTANTM M+E +G+ALPG+ + A ++ RV K G + L+E Sbjct: 181 TETACPGCGSCAGMFTANTMNCMAETMGLALPGNGTIPAVTAARVRLAKHAGMKVMELLE 240 Query: 245 NGIKSREILTFEAFENAITTLMAMGGSTNAVLHLLAIAYEAGVKLTLDDFNRISKRTPYI 304 I R I+T A NA+ MA+GGSTN VLHL A+ EAG+ LTLD F+ +S++TP + Sbjct: 241 KNITPRSIVTPRAVANAVAVDMALGGSTNTVLHLPAVFGEAGLDLTLDIFDEVSRKTPNL 300 Query: 305 ASMKPGGDYVMADLDEVGGVPVVLKKLLDAGLLHGDVLTVTGKTMKQNLEQYKYPNVPHS 364 + P G + + DL GG+P V+ +L GL+ V+TVTGKT+ +NL + V + Sbjct: 301 CKLSPAGHHHIQDLHAAGGIPAVMAELTRKGLVDTSVMTVTGKTLAENLAELN-ARVLNP 359 Query: 365 HIVRDVKNPIKPRGGIVILKGSLAPEGAVIK--VAATNVVKFEGKAKVYNSEDDAFKGVQ 422 ++R P +GGI ILKGSLAP+GAV+K A ++ E A+V++SE +A + Sbjct: 360 DVIRSADAPYSAQGGIAILKGSLAPQGAVVKQSAVAPEMMVREAVARVFDSEGEAHAAIM 419 Query: 423 SGEVSEGEVVIIRYEGPKGAPGMPEMLRVTAAIMGAGLN-NVALVTDGRFSGATRGPMVG 481 G++++G+ +IIRYEGP+G PGM EML TAAI G GL +VAL+TDGRFSG TRG +G Sbjct: 420 GGKINKGDAIIIRYEGPRGGPGMREMLSPTAAIAGMGLGADVALITDGRFSGGTRGAAIG 479 Query: 482 HVAPEAMVGGPIAIVEDGDTIVIDVESERLDLKLSEEEIKNRLKRWSPPSPRYKSGLLAK 541 HV+PEA GG I +V +GD I+ID+ + RLDL + E E+ R + + P S LL + Sbjct: 480 HVSPEAADGGNIGLVREGDHILIDIPARRLDLLVDEAELAARRETFVPLEKPVTSPLLRR 539 Query: 542 YASLVSQASMGAVTR 556 YA V+ A+ GA+ R Sbjct: 540 YARQVTSAATGAMYR 554 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 826 Number of extensions: 39 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 558 Length of database: 555 Length adjustment: 36 Effective length of query: 522 Effective length of database: 519 Effective search space: 270918 Effective search space used: 270918 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate 8501301 DvMF_2034 (dihydroxy-acid dehydratase (RefSeq))
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.30204.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30204.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.