Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate 8501664 DvMF_2382 aspartate-semialdehyde dehydrogenase (RefSeq)
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__Miya:8501664 Length = 349 Score = 328 bits (841), Expect = 1e-94 Identities = 175/332 (52%), Positives = 224/332 (67%), Gaps = 10/332 (3%) Query: 7 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQ 66 VA+ GATGAVG ML L++REFP E+ AS RS G F G + V+ + E + Sbjct: 8 VAVCGATGAVGREMLNTLEQREFPAAEVIPFASARSAGNKVPFMGGELTVRELTEESFRG 67 Query: 67 VHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNI 126 V IALFSAGG S K+AP A +AG VV+DN+S +R D PLVVPEVN A+A + I Sbjct: 68 VDIALFSAGGSTSEKFAPHAVQAGCVVVDNSSAWRMDERCPLVVPEVNAHALAA--HNGI 125 Query: 127 IANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAE 186 IANPNCSTIQM+VALKP++DA I R+ V+TYQ+VSG G+ IDEL Q ++ N + Sbjct: 126 IANPNCSTIQMVVALKPLHDAARITRVVVSTYQAVSGTGQKAIDELEKQVRQMFNMQEPD 185 Query: 187 TNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHA 246 + +IAFNC+PQID FMDN YTKEEMKMV ET KI DPS+ V TCVRVPVFYGH+ Sbjct: 186 VAVYPHRIAFNCLPQIDVFMDNDYTKEEMKMVLETVKIMEDPSVKVTATCVRVPVFYGHS 245 Query: 247 EAVHVETRAPIDAEQVMDMLEQTDGIELFRGADFPTQVR-----DAGGKDHVLVGRVRND 301 E+V++ET + A++ +L Q G+ ++ D P Q DA G+D VGR+R D Sbjct: 246 ESVNIETERKLSAKEARAILAQAPGVRVY---DNPAQKMYPMPIDAAGEDDTFVGRIRED 302 Query: 302 ISHHSGINLWVVADNVRKGAATNAVQIAELLV 333 + +G+N+W+V+DN+RKGAA NAVQIAE LV Sbjct: 303 ETIANGLNMWIVSDNIRKGAALNAVQIAEALV 334 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 334 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 349 Length adjustment: 29 Effective length of query: 308 Effective length of database: 320 Effective search space: 98560 Effective search space used: 98560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 8501664 DvMF_2382 (aspartate-semialdehyde dehydrogenase (RefSeq))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.16314.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16314.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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