Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate 8499797 DvMF_0562 dihydrodipicolinate synthase (RefSeq)
Query= BRENDA::O67216 (294 letters) >FitnessBrowser__Miya:8499797 Length = 292 Score = 302 bits (774), Expect = 5e-87 Identities = 139/284 (48%), Positives = 200/284 (70%) Query: 2 FQGSIVALITPFKEGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEF 61 FQG+ AL+TPF+ GEVD E L+E+ ++ G + ++ CGTTGES TLT +EH+ VI Sbjct: 3 FQGAFTALVTPFRNGEVDEERYRALVEWQIEQGINGLVPCGTTGESATLTHQEHKDVIRI 62 Query: 62 AVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTV 121 V++ GR+ V+AG G N T EAV LT +AK+ GADGAL++ PYYNKPTQ GLY+HFK + Sbjct: 63 CVEQVKGRVPVLAGAGSNNTREAVELTRYAKQAGADGALLITPYYNKPTQEGLYQHFKAI 122 Query: 122 AQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRISEIVKRLGESF 181 A EV +P I+YN+PSRT + +T+ ++ + ++ KE+T N+ ++SEI++ G F Sbjct: 123 AAEVPMPFIVYNVPSRTGTNLCPETLARMKRDIPEVIGVKEATGNLIQVSEIIEYCGADF 182 Query: 182 SVLSGDDSLTLPMMALGAKGVISVANNVMPREVKELIRAALEGDFRRAREIHYYLHDLFK 241 VLSGDD LP++A+G GVISV++NV+P ++ EL RA EGD AR +HY + + + Sbjct: 183 QVLSGDDFTVLPLLAVGGCGVISVSSNVVPAKMSELCRAFFEGDLATARRVHYEIASINR 242 Query: 242 VLFIETNPIPVKTACWMLGMCEKEFRLPLTEMSPENENKLREVL 285 +F+ETNPIPVKTA M+G E E RLP+ + P N+++LR++L Sbjct: 243 AMFLETNPIPVKTALSMMGRIELELRLPMVPLQPANQSRLRDIL 286 Lambda K H 0.318 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 263 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 294 Length of database: 292 Length adjustment: 26 Effective length of query: 268 Effective length of database: 266 Effective search space: 71288 Effective search space used: 71288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate 8499797 DvMF_0562 (dihydrodipicolinate synthase (RefSeq))
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
../bin/blast/fastacmd -i /tmp/list.24500.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24500.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.