Align dihydrodipicolinate reductase; EC 1.3.1.26 (characterized)
to candidate 8499684 DvMF_0450 dihydrodipicolinate reductase (RefSeq)
Query= CharProtDB::CH_002128 (273 letters) >FitnessBrowser__Miya:8499684 Length = 259 Score = 170 bits (431), Expect = 3e-47 Identities = 105/264 (39%), Positives = 142/264 (53%), Gaps = 12/264 (4%) Query: 8 VAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLD 67 + + GAGGRMG + + A + L A +ER LA S D Sbjct: 5 IIVTGAGGRMGSTICRMAQEDPVLTLAAVVERPE---------RLASLDVWKCPSGSDPD 55 Query: 68 AVKDDFD--VFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVF 125 AV V +DFT PE ++ + + G VIGTTG K + D A I + Sbjct: 56 AVFATVPGGVVVDFTSPEASMANARAAARAGVSHVIGTTGLTAEQKAELADLARTARIFW 115 Query: 126 AANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKD 185 A N S+GVNV+LK+L + + +G+ D+E++E HH K D+PSGTAL + E +A A + Sbjct: 116 APNMSIGVNVLLKILPQLVQQLGEQYDLEMVELHHNRKKDSPSGTALRLAECLAEARGWN 175 Query: 186 LKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFAN 245 L D A Y REG GER IG T+R GD+VG HT GER+EITH+A SR FA Sbjct: 176 LPDVANYHREGIIGERPKDEIGIQTIRGGDVVGVHTIYAMGPGERIEITHQAHSRENFAQ 235 Query: 246 GAVRSALWLSGKESG-LFDMRDVL 268 GA+R+A WL ++ G L+ M D+L Sbjct: 236 GALRAAKWLPQQQPGTLYSMLDML 259 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 195 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 259 Length adjustment: 25 Effective length of query: 248 Effective length of database: 234 Effective search space: 58032 Effective search space used: 58032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate 8499684 DvMF_0450 (dihydrodipicolinate reductase (RefSeq))
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.25808.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25808.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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