Align Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 (uncharacterized)
to candidate 8500253 DvMF_1010 diaminopimelate decarboxylase (RefSeq)
Query= curated2:O27390 (428 letters) >FitnessBrowser__Miya:8500253 Length = 421 Score = 280 bits (715), Expect = 8e-80 Identities = 169/403 (41%), Positives = 239/403 (59%), Gaps = 17/403 (4%) Query: 22 ELADEYGTPLYVIDEMRIRENYRRLYRAFSGEYSRFQVFYACKANTNLAVMRILEEEGSG 81 ELA +G+PLYV E +R+ R + +A S + F V Y+ KANTNL+++RI+ EEG Sbjct: 22 ELAAAFGSPLYVYSEALLRKRCRDM-KALSS-HPGFFVNYSAKANTNLSLLRIVREEGLV 79 Query: 82 IDAVSPGEIYTALMAGFDPDRILYTGNNVRDDELQFALDSGVRINVDSRSQLLRLSEIAP 141 +DA+SPGEI+ AGF PD+ILY NNV + EL A+ G+ ++VDS SQL L + Sbjct: 80 VDAMSPGEIHVNKAAGFTPDQILYVCNNVSEAELANAVSHGLLVSVDSLSQLETLGRV-N 138 Query: 142 EGLRISFRVNPLVGAGHHEHCITGGEMSKFGVMEREA--PEVYRMAMDLGFEPVGIHAHI 199 G ++ R NP +GAGHH+ +T G+ +KFGV EA E+ + GI+ HI Sbjct: 139 RGGKVMVRFNPGIGAGHHQKVVTAGKATKFGVDPSEASLAELRAILARHDMTLAGINQHI 198 Query: 200 GSGILDPEPFMLAVETLMDIAGRVHEATGVEFEFIDFGGGLGIPYTP-EEEP-LDIDEFA 257 GS L+PE ++ A + L+ +A + E IDFGGG GIPY E++P LD+ A Sbjct: 199 GSLFLEPEGYVAAADFLLSVAEKFDTV-----EVIDFGGGFGIPYRKYEDQPRLDLAATA 253 Query: 258 SKITGLFKDKLSEYGLGRPMMCLEPGRYIVGDASYLLTRVNTIKES-YRKFAGVDAGFNT 316 ++ L G + +EPGRY+V + LL V+ K + ++ G D GFN Sbjct: 254 ERLHALISGWSERTGY-KGRFYIEPGRYVVAECGLLLGTVHATKNNGPTRYVGTDLGFNV 312 Query: 317 LLRPAMYGSYHHILVAER--PLDEPSEKMDVAGNVCESGDLFARDRQLPEINEGDVLAIM 374 L RP MY ++H I V D V GN+CESGD+ AR+RQLP I EGD+L ++ Sbjct: 313 LARPVMYDAHHDIEVYRNNGTPDAALHPQTVVGNICESGDIMARERQLPAIQEGDILGVL 372 Query: 375 NAGAYSFSMSSQYNSRPRPAEVLV-REGKVDVVRERETFSDLL 416 +AGAY ++MSS YN R RPAEVL+ +G+ ++R RE +DL+ Sbjct: 373 DAGAYGYAMSSTYNQRLRPAEVLIGLDGEPRLIRRREELADLM 415 Lambda K H 0.320 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 531 Number of extensions: 25 Number of successful extensions: 8 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 428 Length of database: 421 Length adjustment: 32 Effective length of query: 396 Effective length of database: 389 Effective search space: 154044 Effective search space used: 154044 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate 8500253 DvMF_1010 (diaminopimelate decarboxylase (RefSeq))
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))
../bin/blast/fastacmd -i /tmp/list.16011.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16011.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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