Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 (characterized)
to candidate 8500980 DvMF_1717 N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq)
Query= SwissProt::Q07906 (345 letters) >FitnessBrowser__Miya:8500980 Length = 350 Score = 295 bits (754), Expect = 2e-84 Identities = 153/348 (43%), Positives = 219/348 (62%), Gaps = 3/348 (0%) Query: 1 MMNVAIIGATGYSGAELFRLLYGHPHVSQCDVFSSSQDGIHLSESFPHVGAVDG--AVLH 58 ++ ++G TGY+G EL RLL GHP++ S ++ G LS+ +P + + G AV+ Sbjct: 3 IIRAGLVGVTGYTGMELTRLLAGHPNMRLVRATSRTEAGRPLSDIYPFLRGLPGGNAVMT 62 Query: 59 KLEIEALA-KYDAVFFATPPGVSGEWAPALVDRGVKVIDLSGDFRLKDGAVYAQWYGREA 117 + + LA D F A P G + E L RG++V+DLS DFRL+D VY WY Sbjct: 63 APDPDDLADNCDVAFLAVPHGAAMEMGATLRQRGLRVVDLSADFRLRDPDVYEAWYKVPH 122 Query: 118 APSAYLERAVYGLTEWNREAVRGAVLLSNPGCYPTATLLGLAPLVKEGLIKEDSIIVDAK 177 A L +AVYGL E +AV+ A L++NPGCYPTAT+LGL +K GL++ D I+VDAK Sbjct: 123 TRRAELPQAVYGLPELYGDAVKKAGLVANPGCYPTATILGLYAALKHGLVETDGIVVDAK 182 Query: 178 SGVSGAGRKAGLGTHFSEVNENVKIYKVNAHQHIPEIEQALQTWNEAVAPITFSTHLIPM 237 SG +GAGRKA +GT F EV++ + Y + H+H PEIEQ L ++F+ HL+P+ Sbjct: 183 SGATGAGRKAAVGTLFCEVSDTFRAYNIGKHRHTPEIEQELSAIAGTSMVVSFNPHLLPI 242 Query: 238 TRGIMATIYAKAKQSISPNDLVDLYKTSYEGSPFVRIRQLGQFPATKDVYGSNYCDIGLA 297 RGI+ATIYAK + +SP D+ ++ +++GS +VR+ GQ P T+ V G+ +CD+G+ Sbjct: 243 NRGILATIYAKLAKPVSPQDVQAAFEQTWQGSRWVRVLPAGQLPETRHVRGTMFCDVGVV 302 Query: 298 YDERTERVTVVSVIDNLMKGAAGQAVQNFNLMMGWDEAEGLRSLPIYP 345 D+RT R+ ++S IDNL +GA+GQAV N NLM G GL P+ P Sbjct: 303 TDQRTNRLVILSAIDNLCRGASGQAVANANLMFGLPVETGLMLAPLMP 350 Lambda K H 0.318 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 334 Number of extensions: 14 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 345 Length of database: 350 Length adjustment: 29 Effective length of query: 316 Effective length of database: 321 Effective search space: 101436 Effective search space used: 101436 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate 8500980 DvMF_1717 (N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq))
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.21151.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21151.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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