GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvC in Desulfovibrio vulgaris Miyazaki F

Align Ketol-acid reductoisomerase (NAD(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; EC 1.1.1.382 (characterized)
to candidate 8499378 DvMF_0155 ketol-acid reductoisomerase (RefSeq)

Query= SwissProt::K4LVZ1
         (332 letters)



>FitnessBrowser__Miya:8499378
          Length = 330

 Score =  463 bits (1192), Expect = e-135
 Identities = 222/330 (67%), Positives = 269/330 (81%)

Query: 1   MKIYYDQDADLQYLDGKTVAVIGYGSQGHAQSQNLRDSGVKVVVADIPSSENWKKAEEAQ 60
           MK+YY+QDA L+ L  KTVA+IGYGSQGHA +QNLRDSG+ VVV   P   N++ A+E  
Sbjct: 1   MKVYYEQDATLEVLKDKTVAIIGYGSQGHAHAQNLRDSGINVVVGQRPGGANYELAKEHG 60

Query: 61  FQPLTADEAAREADIIQILVPDEKQAALYRESIAPNLRPGKALVFSHGFNIHFKQIVPPP 120
           F PL   EAA +AD+I IL+PD+ QAA+Y   I PNL+PG AL+F+HGFNIHF QI PP 
Sbjct: 61  FAPLPVAEAAAKADLIMILLPDQVQAAIYEAEIKPNLKPGDALLFAHGFNIHFGQIEPPK 120

Query: 121 DVDVFMVAPKGPGHLVRRMYEEGAGVPSLVAVEQDYSGQALNLALAYAKGIGATRAGVIQ 180
           DVDVFM+APKGPGHLVRR Y EG GVP LVA+ QD +G+A+  ALAYAKG+G  R+GVI+
Sbjct: 121 DVDVFMIAPKGPGHLVRRTYTEGGGVPCLVAIHQDATGKAMEKALAYAKGVGGARSGVIE 180

Query: 181 TTFKEETETDLFGEQAVLCGGITELIRAGFDTLVDAGYQPEIAYFECLHEMKLIVDLIYE 240
           TTFKEETETDLFGEQAVLCGG++ LI+AGF+TLV+AGYQPEIAYFECLHE+KLIVDLIYE
Sbjct: 181 TTFKEETETDLFGEQAVLCGGLSSLIKAGFETLVEAGYQPEIAYFECLHEVKLIVDLIYE 240

Query: 241 GGISTMRYSISDTAEYGDLTRGKRIITEATREEMKKILKEIQDGVFAREWLLENQVGRPV 300
           GG++ MR+SISDTAEYGD   G+RI+ E T++EMKK+L+EIQ+G FAR ++LE + G P 
Sbjct: 241 GGLAKMRHSISDTAEYGDYVTGRRIVNEETKKEMKKVLQEIQEGTFARNFILEAKAGYPG 300

Query: 301 YNALRRKEQNHLIETVGARLRGMMPWLKKK 330
           + A RR E +H IE VG +LRGMMPWL KK
Sbjct: 301 FKATRRIEADHQIEQVGGKLRGMMPWLHKK 330


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 378
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 330
Length adjustment: 28
Effective length of query: 304
Effective length of database: 302
Effective search space:    91808
Effective search space used:    91808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate 8499378 DvMF_0155 (ketol-acid reductoisomerase (RefSeq))
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.32714.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32714.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.