Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate 8501148 DvMF_1883 acetolactate synthase catalytic subunit (RefSeq)
Query= BRENDA::P08142 (562 letters) >FitnessBrowser__Miya:8501148 Length = 615 Score = 645 bits (1665), Expect = 0.0 Identities = 331/569 (58%), Positives = 411/569 (72%), Gaps = 9/569 (1%) Query: 2 ASSGTTSTRKRF-TGAEFIVHFLEQQGIKIVTGIPGGSILPVYDALSQSTQIRHILARHE 60 AS + RKR GA+ ++ LE+QGI ++ GIPGG+ LP+YDAL ++ IRH+LARHE Sbjct: 14 ASGAAPTPRKRQPNGADLVIRLLERQGIDVIAGIPGGANLPLYDALGRAGSIRHVLARHE 73 Query: 61 QGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTD 120 QGAGF+AQGMAR G+PAV A SGPGATN +TAIADA+LDS+P++CITGQVP ++G+D Sbjct: 74 QGAGFMAQGMARVTGRPAVFFATSGPGATNTLTAIADAKLDSVPVVCITGQVPLGLVGSD 133 Query: 121 AFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVFE 180 AFQEVD YG+SIP+TKHN+LVR +EEL +V+ AFRIA SGRPGPV +DIPK+VQ A + Sbjct: 134 AFQEVDIYGMSIPVTKHNFLVRSVEELAEVIPAAFRIAASGRPGPVLVDIPKNVQMAEVD 193 Query: 181 ---IETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPAR--VRELAEK 235 + P + AA PA I AAA++NAA+RP+LYLGGGV+ + A +LAE+ Sbjct: 194 QAVFDNPPQPGQPAAPPAPDPAGISRAAALLNAAQRPMLYLGGGVVASGASDMAVQLAER 253 Query: 236 AQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFDDRAIGKTE 295 A LPT MTLMALG +P HPLSLGMLGMH R TN +L E D+L+V GARFDDRA+GK E Sbjct: 254 AGLPTVMTLMALGAMPAGHPLSLGMLGMHAARHTNLLLAECDVLLVAGARFDDRAVGKAE 313 Query: 296 QFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLIPLVEAQPRA---EWHQLVAD 352 +FCP A IIH+DID +EL KI H I DV LA+L+PL+ + A W V + Sbjct: 314 RFCPGATIIHIDIDESELDKILPVHCGITGDVGLALAELLPLLRTRAEAGREAWLTRVEE 373 Query: 353 LQREFPCPIPKACDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLT 412 +R P +P A DP + YGLI A VD +AI+ TDVGQHQM TAQAYPL PR+WLT Sbjct: 374 CRRRHPFVMPGADDPRTPYGLIRCAADAVDHDAIVATDVGQHQMRTAQAYPLRGPRRWLT 433 Query: 413 SGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNE 472 SGGLGTMGFGLPAAIGAALA P+ VLCF+GDGSL MNIQE+ATA+E ++VKI+L +N Sbjct: 434 SGGLGTMGFGLPAAIGAALARPEATVLCFTGDGSLQMNIQELATAAEEGVNVKILLADNN 493 Query: 473 ALGLVHQQQSLFYEQGVFAATYPGKINFMQIAAGFGLETCDLNNEADPQASLQEIINRPG 532 ALGLV QQQ LFYE + A+TY K++F +IA GFG+ DL+ P L + + PG Sbjct: 494 ALGLVRQQQELFYEGRLVASTYRRKVDFARIAEGFGVPAVDLDASEHPLRDLADALRAPG 553 Query: 533 PALIHVRIDAEEKVYPMVPPGAANTEMVG 561 P LI V + A VYPMVPPGA N +M+G Sbjct: 554 PCLIRVTVPAGANVYPMVPPGADNLQMIG 582 Lambda K H 0.320 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1115 Number of extensions: 52 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 562 Length of database: 615 Length adjustment: 37 Effective length of query: 525 Effective length of database: 578 Effective search space: 303450 Effective search space used: 303450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate 8501148 DvMF_1883 (acetolactate synthase catalytic subunit (RefSeq))
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.11856.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11856.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.