GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvI in Desulfovibrio vulgaris Miyazaki F

Align Probable acetolactate synthase small subunit; EC 2.2.1.6; Acetohydroxy-acid synthase small subunit; AHAS; ALS (uncharacterized)
to candidate 8501909 DvMF_2624 acetolactate synthase, small subunit (RefSeq)

Query= curated2:O28555
         (159 letters)



>FitnessBrowser__Miya:8501909
          Length = 160

 Score =  118 bits (296), Expect = 4e-32
 Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 1   MKHTIAVLVENKPGVLARVAGLFRRRGFNIESLTVGTTERDDLSRMTIVVEGDDKVVEQV 60
           MKHT++VLV+N+ G +A    +FRRRG +  S++   TE  D+SR+ + VE  +  +E +
Sbjct: 1   MKHTLSVLVKNRAGAVAEATDVFRRRGISFRSISCAETEDFDVSRLVLTVEDHEAELESI 60

Query: 61  IKQLNKLIETIKVSEITESS-VERELCLIRVHAPPEKRGEIVELTNIFRARIVDVSRDSF 119
            ++L        V +++    V+REL L++V    E   +I+++  +FRA ++ + +++ 
Sbjct: 61  AEELRAQDVVAMVEDLSRRDFVDRELVLVKVDVTRETTTQIMQVCEVFRASVIGMGQETM 120

Query: 120 IIEVTGDEDKVSAFIDLMRQYGIKELARTGKVAMVRGN 157
            +E+TGD  KV  FI ++R +GI+ LARTG VAM RG+
Sbjct: 121 TVEMTGDTQKVDGFIRMLRPFGIRSLARTGVVAMKRGD 158


Lambda     K      H
   0.319    0.137    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 160
Length adjustment: 17
Effective length of query: 142
Effective length of database: 143
Effective search space:    20306
Effective search space used:    20306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)

Align candidate 8501909 DvMF_2624 (acetolactate synthase, small subunit (RefSeq))
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.16270.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16270.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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