GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argA in Dechlorosoma suillum PS

Align amino-acid N-acetyltransferase (EC 2.3.1.1) (characterized)
to candidate Dsui_1570 Dsui_1570 amino-acid N-acetyltransferase

Query= BRENDA::P22567
         (432 letters)



>FitnessBrowser__PS:Dsui_1570
          Length = 448

 Score =  413 bits (1062), Expect = e-120
 Identities = 222/436 (50%), Positives = 290/436 (66%), Gaps = 8/436 (1%)

Query: 4   YVNWLRHASPYINSHRDRTFVVMLPGEGVEHPNFGNIVHDLVLLHSLGARLVLVHGSRPQ 63
           +V W R  +PY+N+ R +TFVV   G+ +  P      +D+ LL +LG RLVLVHGSRPQ
Sbjct: 12  FVAWFRSVAPYVNAFRGKTFVVAFGGKSISGPLARTFAYDVSLLANLGVRLVLVHGSRPQ 71

Query: 64  IEARLAARGLAPRYHRDLRVTDAPTLECVIDAVGSLRIAIEARLSMDMAASPMQGARLRV 123
           IE  L  +GL  R+H   R+TDA TL+CVIDAVGS+ + +EA LS  +  +PM G  +RV
Sbjct: 72  IEEELQEKGLESRFHAGQRITDADTLDCVIDAVGSVYLEVEALLSQGLPNTPMAGNTIRV 131

Query: 124 AGGNLVTARPIGVVEGVDYHHTGEVRRIDRKGIGRLLDERSIVLLSPLGYSPTGEIFNLA 183
            GGN +TARP+GV++GVD  +TG VR+ID +G+   L   +IVLLS LG SPTGEIFNL+
Sbjct: 132 VGGNFITARPMGVLDGVDLQYTGAVRKIDAEGLKAQLGLGNIVLLSNLGASPTGEIFNLS 191

Query: 184 CEDVAMRAAIDLEAEKLILYGAEQGLLDASGKLVRELRPQQVPAHLQRLGNSYQAEL--- 240
            E+VA  AA  L A+KLI     QG  DA G L+ EL        L R+G     +L   
Sbjct: 192 MEEVAEEAAKALGADKLIFLTDSQGATDAEGNLLDEL-TADAAEQLARVGEWLSPDLKRY 250

Query: 241 LDAAAQACRAGVKRSHIVSYTEDGALLSELFTRTGNGTLVAQEQFEQLREAGIEDVGGLI 300
           L  A +A R GV R HI+ Y  DGA+L ELFT  G GT+V ++  + LR+A  +D+GGL+
Sbjct: 251 LPCAVRASRRGVGRVHIIGYELDGAVLHELFTHDGVGTVVTRDPLDTLRDAKPDDIGGLV 310

Query: 301 ELIRPLEEQGILVRRSREVLEREIEQFSIVEREGLIIACAALYPIAD----SEAGELACL 356
            LI PLEE G LV R RE+LEREI +FS+VE +G+I+ CAALYP A+    ++  ELACL
Sbjct: 311 GLIAPLEEDGTLVHRPRELLEREIGRFSVVEHDGVIVGCAALYPYAEDGQKAKTAELACL 370

Query: 357 AVNPEYRHGGRGDELLERIEERARGLGLKTLFVLTTRTAHWFRERGFQPSSVERLPAARA 416
           AV+PE+R  G G+ L++ IE +A+  G+K LFVLTTRT HWF ERGF  +SV+ LP  + 
Sbjct: 371 AVSPEHRRWGYGERLMQHIEGKAKAAGVKRLFVLTTRTTHWFIERGFALASVDELPEEKR 430

Query: 417 SLYNFQRNSQVFEKSL 432
            +YN QR S+V  KSL
Sbjct: 431 HMYNLQRRSKVLMKSL 446


Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 553
Number of extensions: 24
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 448
Length adjustment: 32
Effective length of query: 400
Effective length of database: 416
Effective search space:   166400
Effective search space used:   166400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate Dsui_1570 Dsui_1570 (amino-acid N-acetyltransferase)
to HMM TIGR01890 (argA: amino-acid N-acetyltransferase (EC 2.3.1.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.5565.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5565.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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