Align glutamyl-tRNAGln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate Dsui_0884 Dsui_0884 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
Query= metacyc::MONOMER-13956 (476 letters) >FitnessBrowser__PS:Dsui_0884 Length = 485 Score = 445 bits (1144), Expect = e-129 Identities = 234/476 (49%), Positives = 325/476 (68%), Gaps = 9/476 (1%) Query: 2 NFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAMK 61 N+E VIG+E H +L T+SKIFS S T FGA+ N Q S +DL PGVLPVLN+ AVE A+K Sbjct: 5 NWEVVIGIETHAQLSTQSKIFSGSSTAFGAQPNVQASAVDLALPGVLPVLNRGAVECAIK 64 Query: 62 AAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEVGGKTKR----IG 117 +++ E+A + F RKNYFYPD PK YQISQF+ P+ G + I+VG K + Sbjct: 65 FGLSIGAEVAAKSVFARKNYFYPDLPKGYQISQFELPVVVGGGVRIQVGQGDKAYEKVVR 124 Query: 118 ITRLHLEEDAGKLTHTG-DGYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQ 176 +TR HLEEDAGK H G S +D NR GTPL+EIV+EPD+ + EA AY + L ++++ Sbjct: 125 LTRAHLEEDAGKSLHEDFHGKSGIDLNRAGTPLLEIVTEPDMCSSAEAVAYAKALHALVR 184 Query: 177 YTGVSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSFAFVQKGLEHEEKRQEQVL 236 + G+ D M+EGS RCDAN+S+R G E GT+ E+KNLNSF F+Q+ +++E + Q L Sbjct: 185 WIGICDGNMQEGSFRCDANVSVRRPG-EPLGTRREIKNLNSFRFLQQAIDYEIQWQIDTL 243 Query: 237 LSGFFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVKASIPEL 296 G IQQ T +D + +T +MR KE + DYRYFP+PDL+ L I EW ER KA++PEL Sbjct: 244 EDGGKIQQATVLFDPDSGETRVMRTKEDAHDYRYFPDPDLLPLVISREWVERTKATLPEL 303 Query: 297 PDERRKRYIEELGFAAYDAMVLTLTKEMADFFEE--TVQKGAEAKQASNWLMGEVSAYLN 354 P+ +R+R++E+LG +AYDA LT + E+AD+F+ T A AK A+NW+MGE+SA LN Sbjct: 304 PEAKRQRFMEQLGLSAYDATALTASLEVADYFDAVVTAAGAANAKSAANWVMGELSARLN 363 Query: 355 AEQKELADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIE-KGGDAEKIVKEKGLVQI 413 E K++A ++ LAG+I I TIS+ IAKKVF+ L G A+++++++GL QI Sbjct: 364 KEDKDIAASPVSAAQLAGLIARIADNTISNNIAKKVFEALWNGDGASADEVIEKQGLKQI 423 Query: 414 SDEGVLLKLVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKIL 469 +D G + KLV E L N ++ ++K GK++A LVGQ+MKA+KG+ANP VN +L Sbjct: 424 TDTGAIEKLVDEVLAANAANVAEYKAGKEKAFNALVGQVMKAAKGKANPQQVNDLL 479 Lambda K H 0.314 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 560 Number of extensions: 23 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 476 Length of database: 485 Length adjustment: 34 Effective length of query: 442 Effective length of database: 451 Effective search space: 199342 Effective search space used: 199342 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 51 (24.3 bits)
Align candidate Dsui_0884 Dsui_0884 (glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.16282.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16282.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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