GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisC in Dechlorosoma suillum PS

Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate Dsui_1414 Dsui_1414 histidinol-phosphate aminotransferase

Query= curated2:Q48ED0
         (350 letters)



>FitnessBrowser__PS:Dsui_1414
          Length = 395

 Score =  459 bits (1180), Expect = e-134
 Identities = 239/356 (67%), Positives = 272/356 (76%), Gaps = 6/356 (1%)

Query: 1   MSKFWSPFVSGLVPYVPGEQPKLTRLVKLNTNENPYGPSPKAVEAMRAALTDD---LRLY 57
           MSKFWSP V+ L PYVPGEQPKL  LVKLNTNENPY PSPK V AM+A +  D   LRLY
Sbjct: 38  MSKFWSPLVNRLTPYVPGEQPKLPNLVKLNTNENPYPPSPKTVAAMQAEIGHDGASLRLY 97

Query: 58  PDPNSDLLKHAVADYYK---VQPNQVFLGNGSDEVLAHIFHALFQHDASLLFPDISYSFY 114
           PDP++D LK AVA +Y    +   QVF+GNGSDEVLAH+F AL QHDA LL+PDISYSFY
Sbjct: 98  PDPSADRLKEAVAAFYGEFGIGARQVFVGNGSDEVLAHVFMALLQHDAPLLYPDISYSFY 157

Query: 115 PVYCGLYGIDYEMIALDDQFQIRAEDYAKPNAGIIFPNPNAPTGCLLGLDKVEQIIKASP 174
           PVY GLYGI  E +ALD  + I    Y + N GIIFPNPNAPTG LL L ++E ++ A+ 
Sbjct: 158 PVYAGLYGISAETVALDGDYGIDLSAYRRANGGIIFPNPNAPTGRLLPLGEIEALLTANT 217

Query: 175 DSVVVVDEAYIDFGGETAITLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHSDLIEALER 234
           +SVVVVDEAY+DFGG+TAI LV+R+PNLLV  TLSKSRSLAGLRVG AVGH DLIEALER
Sbjct: 218 ESVVVVDEAYVDFGGDTAIALVNRFPNLLVVHTLSKSRSLAGLRVGYAVGHPDLIEALER 277

Query: 235 VKNSFNSYPLDRMANVGGAAAFEDREHFESTRNKVIESREALVEQLQGKGFEVLPSAANF 294
           VKNSFNSYPLDR+A  G  AA EDR  F+ TRN VI SRE LV  L   GF+VLPSAANF
Sbjct: 278 VKNSFNSYPLDRIAIAGAVAALEDRAWFDRTRNAVIASREQLVSDLTLLGFQVLPSAANF 337

Query: 295 IFARHPQHDAAALAAKLREQGVIVRHFKQQRIAQFLRISIGTPEQHQALLEGLSDI 350
           +FARHP  D A LA  LR++ +IVRHFK  RI QFLRI+IGT EQ  AL+  L +I
Sbjct: 338 VFARHPGRDGAELAQALRQRSIIVRHFKAPRIDQFLRITIGTDEQCGALVAALKEI 393


Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 496
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 395
Length adjustment: 30
Effective length of query: 320
Effective length of database: 365
Effective search space:   116800
Effective search space used:   116800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate Dsui_1414 Dsui_1414 (histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.24934.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24934.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.