Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate Dsui_3201 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Query= CharProtDB::CH_024771 (466 letters) >FitnessBrowser__PS:Dsui_3201 Length = 468 Score = 593 bits (1530), Expect = e-174 Identities = 298/467 (63%), Positives = 355/467 (76%), Gaps = 2/467 (0%) Query: 1 MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT 60 M +TLY+KL+ HVV+E + T L+YIDRHLVHEVTSPQAF+GL+ GR + AT Sbjct: 1 MPQTLYDKLWQNHVVHEEADGTALIYIDRHLVHEVTSPQAFEGLKLAGRKPWRVSSIVAT 60 Query: 61 MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELY-DLNHPYQGIVHVMGPEQGVTL 119 DHN T + ++R Q++ L N +E G Y QGIVHV+GPE G TL Sbjct: 61 ADHNTPTDHWEEGIKDPISRQQVETLDANIREVGALAYWPFKDMRQGIVHVVGPENGATL 120 Query: 120 PGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGIT 179 PGMT+VCGDSHT+THGAF +A GIGTSEVEHV+ATQ L Q ++K+M I V+GK G+T Sbjct: 121 PGMTVVCGDSHTSTHGAFACMAHGIGTSEVEHVMATQCLIQKKSKSMLIRVEGKLGKGVT 180 Query: 180 AKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETT 239 KD+ LAIIGK G+AGGTG+ +EF G AIR LSMEGRMTLCNMAIE GA+ G VA D+TT Sbjct: 181 GKDVALAIIGKIGTAGGTGYAIEFGGSAIRGLSMEGRMTLCNMAIEAGARMGFVAVDDTT 240 Query: 240 FNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVIS 299 NY+K R +PKG+ +D AVAYW+TL++DEGA FD V L+AEEI PQVTWGT+P V+ Sbjct: 241 INYLKDRPFSPKGETWDKAVAYWRTLKSDEGARFDCTVDLKAEEIQPQVTWGTSPEMVVP 300 Query: 300 VNDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAA 359 + +PDPA ADPV+R E+AL YMGL P + + ++AIDKVFIGSCTNSRIEDLR AA Sbjct: 301 IGATVPDPAKEADPVKREGMERALQYMGLTPNLEIKKIAIDKVFIGSCTNSRIEDLREAA 360 Query: 360 EIAKGRKVAPGVQ-ALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRL 418 + +GR+ A V+ ALVVPGSG VK QAEAEGLDKIF+ AGFEWR PGCSMCLAMN DRL Sbjct: 361 AVVRGRQKAANVKLALVVPGSGLVKRQAEAEGLDKIFVAAGFEWREPGCSMCLAMNADRL 420 Query: 419 NPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNI 465 PGERCASTSNRNFEGRQG GGRTHLVSPAMAAAA + GHFAD+R+I Sbjct: 421 EPGERCASTSNRNFEGRQGPGGRTHLVSPAMAAAAGIAGHFADVRDI 467 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 738 Number of extensions: 27 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 468 Length adjustment: 33 Effective length of query: 433 Effective length of database: 435 Effective search space: 188355 Effective search space used: 188355 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Dsui_3201 Dsui_3201 (3-isopropylmalate dehydratase, large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.7719.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7719.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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