Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate Dsui_3227 Dsui_3227 2-isopropylmalate synthase
Query= BRENDA::P9WQB3 (644 letters) >FitnessBrowser__PS:Dsui_3227 Length = 560 Score = 594 bits (1532), Expect = e-174 Identities = 310/608 (50%), Positives = 402/608 (66%), Gaps = 61/608 (10%) Query: 40 SMPVNRYRPFAEEVEPIRLRNRTWPDRVIDRAPLWCAVDLRDGNQALIDPMSPARKRRMF 99 S P ++YRPFA P++L +R WP RVI P+W + DLRDGNQ+L +PM+ +K RMF Sbjct: 3 SNPSSKYRPFA----PVQLADRQWPSRVITTPPMWMSTDLRDGNQSLFEPMNVEKKMRMF 58 Query: 100 DLLVRMGYKEIEVGFPSASQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACS 159 L ++G+KEIEV FPSASQTDF+FVR +IE G IP DVTI+VLTQ R LI RT ++ Sbjct: 59 KTLCQVGFKEIEVAFPSASQTDFNFVRSLIEDGHIPQDVTIEVLTQAREHLIRRTMESIK 118 Query: 160 GAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPES 219 GAPRAIVH YN+TS R VF ++AEV A+A + + AA+ P T+ EYSPE+ Sbjct: 119 GAPRAIVHVYNATSQPFRDFVFGMSKAEVVAMAVEAVTLIKQLAAEMPETEVVLEYSPET 178 Query: 220 YTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRES 279 +T TEL++A +VCDAV TP+ +I NLP TVEM TPN+YAD IEWM R+LA R+S Sbjct: 179 FTATELDFALEVCDAVTAAWGATPDNKVILNLPTTVEMATPNIYADQIEWMHRHLARRDS 238 Query: 280 VILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQ 339 VILSLHPHNDRGTAVAAAELG AGADR+EGCLFGNGERTGNV +VT+ LN++++GV P Sbjct: 239 VILSLHPHNDRGTAVAAAELGLMAGADRVEGCLFGNGERTGNVDIVTVALNMYTQGVHPG 298 Query: 340 IDFSNIDEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDADAADC 399 +DFS+I+ + RTVE+CNQLP+H RHPY GDLV+TAFSGSHQDAI KG A K DA Sbjct: 299 LDFSDINAVARTVEHCNQLPIHPRHPYVGDLVFTAFSGSHQDAIKKGFSAQKADAP---- 354 Query: 400 DVDDMLWQVPYLPIDPRDVGRTYEAVIRVNSQSGKGGVAYIMKTDHGLSLPRRLQIEFSQ 459 W VPYLPIDP DVGR+Y++VIRVNSQSGKGG+AY+++T++G+ +PRRLQ+EFS Sbjct: 355 ------WNVPYLPIDPADVGRSYDSVIRVNSQSGKGGIAYLLETEYGVVMPRRLQVEFSG 408 Query: 460 VIQKIAEGTAGEGGEVSPKEMWDAFAEEYLAPVRPLERIRQHVDAADDDGGTTSITATVK 519 V+Q+ A+ G E++ ++W F YL PV P+ H+ + G I +V Sbjct: 409 VVQQHAD---SHGSELTAADIWQLFCRTYLEPVAPVHYREHHL---FEHGSAQGIRLSVD 462 Query: 520 INGVETEISGSGNGPLAAFVHALADVGFDVAVLDYYEHAMSA---GDDAQAAAYVEASVT 576 I+G +SG GNGP+ A +HAL G V V Y E +M+ G +A+A A+VE + Sbjct: 463 IDGTAHLLSGEGNGPIDAAIHALRGAGMQVQVRSYEERSMAPSQDGGEARACAFVEMA-- 520 Query: 577 IASPAQPGEAGRHASDPVTIASPAQPGEAGRHASDPVTSKTVWGVGIAPSITTASLRAVV 636 + +GVGI +I TASL+A+V Sbjct: 521 ------------------------------------CDGREFYGVGIDGNIVTASLKAIV 544 Query: 637 SAVNRAAR 644 S +NR+ + Sbjct: 545 SGLNRSGQ 552 Lambda K H 0.317 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 922 Number of extensions: 33 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 644 Length of database: 560 Length adjustment: 37 Effective length of query: 607 Effective length of database: 523 Effective search space: 317461 Effective search space used: 317461 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate Dsui_3227 Dsui_3227 (2-isopropylmalate synthase)
to HMM TIGR00970 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))
../bin/blast/fastacmd -i /tmp/list.3313.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3313.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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