Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate Dsui_2134 Dsui_2134 aspartate kinase, monofunctional class
Query= SwissProt::Q88EI9 (411 letters) >FitnessBrowser__PS:Dsui_2134 Length = 407 Score = 576 bits (1485), Expect = e-169 Identities = 297/405 (73%), Positives = 348/405 (85%), Gaps = 1/405 (0%) Query: 1 MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60 MALIVQK+GGTSVGS ERI+ VA++V + + G D+VVV SAMSGETNRLI LAK+I+ Sbjct: 1 MALIVQKYGGTSVGSTERIKNVAKRVARWKAMGHDVVVVPSAMSGETNRLIGLAKEISAT 60 Query: 61 PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120 P PRELDVI STGEQVTI LL MA+ + G+ A SYTG+QVR+LTDS+ KARILQIDD++ Sbjct: 61 PSPRELDVIASTGEQVTIGLLAMAIQEEGLKAKSYTGSQVRVLTDSTFTKARILQIDDER 120 Query: 121 IRADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180 +R DL EG VVVVAGFQG DE+G+ITTLGRGGSDT+ VALAAALKADECQIYTDVDGVYT Sbjct: 121 MRKDLAEGNVVVVAGFQGADENGNITTLGRGGSDTSAVALAAALKADECQIYTDVDGVYT 180 Query: 181 TDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFK-EGPGTL 239 TDPRVVP+AR+L+ ITFEEMLEMASLGSKVLQIRSVEFAGKY V LRVL SF+ EG GTL Sbjct: 181 TDPRVVPEARKLDTITFEEMLEMASLGSKVLQIRSVEFAGKYKVKLRVLSSFQDEGEGTL 240 Query: 240 ITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVA 299 IT++++++MEQPIISGIAFNRDEAKLT+ GVPD PG+A++ILGPI+ +NI+VDMI+QNV Sbjct: 241 ITVEDDKNMEQPIISGIAFNRDEAKLTVLGVPDRPGIAYQILGPIADANIDVDMIIQNVG 300 Query: 300 HDNTTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASC 359 D TTDF+FTV+R+EY KA +VLE + +GARE++GD K KVS VGVGMRSH GVAS Sbjct: 301 VDGTTDFSFTVNRSEYTKAMAVLEQVKQHVGAREIVGDNKTCKVSAVGVGMRSHPGVASQ 360 Query: 360 MFEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLD 404 MF LA+E INIQMISTSEIK+SVV++EKYLELAVR LH F LD Sbjct: 361 MFRTLAEEGINIQMISTSEIKISVVIDEKYLELAVRILHKTFGLD 405 Lambda K H 0.316 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 548 Number of extensions: 14 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 411 Length of database: 407 Length adjustment: 31 Effective length of query: 380 Effective length of database: 376 Effective search space: 142880 Effective search space used: 142880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate Dsui_2134 Dsui_2134 (aspartate kinase, monofunctional class)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.1979.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1979.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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