Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate Dsui_1977 Dsui_1977 dihydrodipicolinate synthase
Query= BRENDA::Q9I4W3 (292 letters) >FitnessBrowser__PS:Dsui_1977 Length = 292 Score = 388 bits (996), Expect = e-113 Identities = 193/292 (66%), Positives = 233/292 (79%) Query: 1 MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVI 60 MI GS+VA+VTP GRLD+DSL KL+DFH+QEGT+ IV VGT+GES T++V+EH ++I Sbjct: 1 MITGSIVAIVTPMSDDGRLDYDSLKKLIDFHVQEGTDGIVIVGTSGESPTVNVDEHAELI 60 Query: 61 RRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFR 120 R V GRIPVIAGTGANST EA+ LT AKS GADA L V PYYNKPTQEG+YQHFR Sbjct: 61 RTTVKHAAGRIPVIAGTGANSTSEAIELTRFAKSVGADAALSVVPYYNKPTQEGLYQHFR 120 Query: 121 HIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKD 180 IAEAV IP ILYNVPGRT DM +T RL+++ N++GIK+ATG+L+R ++I R D Sbjct: 121 SIAEAVDIPVILYNVPGRTVADMSNDTALRLAQIDNVVGIKDATGNLERGADLIARAPAD 180 Query: 181 FLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLH 240 F VYSGDDA+AV L+LLGGKG+ISVTANVAPR M ++CAAA+ GD A AR I+ +L+ LH Sbjct: 181 FAVYSGDDASAVALILLGGKGDISVTANVAPRLMHEMCAAALAGDVAKAREIHFKLLGLH 240 Query: 241 KALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVLA 292 + LF E+NPIPVKWA+ ++GLIP GIRLPLT LSP CHE +R AMRQ GVLA Sbjct: 241 RHLFCEANPIPVKWAVQQLGLIPGGIRLPLTTLSPECHERVRSAMRQAGVLA 292 Lambda K H 0.319 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 292 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 292 Length of database: 292 Length adjustment: 26 Effective length of query: 266 Effective length of database: 266 Effective search space: 70756 Effective search space used: 70756 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Dsui_1977 Dsui_1977 (dihydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
../bin/blast/fastacmd -i /tmp/list.11504.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11504.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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