Align dihydrodipicolinate reductase; EC 1.3.1.26 (characterized)
to candidate Dsui_3066 Dsui_3066 dihydrodipicolinate reductase
Query= CharProtDB::CH_002128 (273 letters) >FitnessBrowser__PS:Dsui_3066 Length = 268 Score = 328 bits (840), Expect = 1e-94 Identities = 164/267 (61%), Positives = 202/267 (75%), Gaps = 1/267 (0%) Query: 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQ 63 + +R+A+AGA GRMGR LI+A L V LGAA +R GS +G DAG+L G G+ V Sbjct: 2 SKLRIAVAGASGRMGRMLIEATLKDGEVVLGAAFDRPGSPAVGKDAGDLVGQ-PCGIQVL 60 Query: 64 SSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAI 123 S +A D IDFTRPEGTL HLA CR+ G M+IGTTGFDEAGK AIRDAA DI + Sbjct: 61 DSAEAALKQADCLIDFTRPEGTLEHLALCRKLGVAMIIGTTGFDEAGKAAIRDAAQDIPV 120 Query: 124 VFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALD 183 VFA N +VGVN++ KLL+ AA+++ DIEI+EAHH+HK+DAPSGTAL MGE +AHAL Sbjct: 121 VFAPNMAVGVNLVFKLLDVAARILNQGYDIEIVEAHHKHKIDAPSGTALRMGEVVAHALG 180 Query: 184 KDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTF 243 +DLK+CA+Y REG TGER P TIGFATVR GDIVG+H MF GER+EI HKA SRM + Sbjct: 181 RDLKECAIYGREGVTGERDPSTIGFATVRGGDIVGDHNVMFCGTGERVEIAHKAGSRMPY 240 Query: 244 ANGAVRSALWLSGKESGLFDMRDVLDL 270 A G++R+A +L+GK++GLFDM+DVL L Sbjct: 241 ALGSLRAARFLAGKKNGLFDMQDVLGL 267 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 310 Number of extensions: 13 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 268 Length adjustment: 25 Effective length of query: 248 Effective length of database: 243 Effective search space: 60264 Effective search space used: 60264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate Dsui_3066 Dsui_3066 (dihydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.10652.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10652.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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