Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (characterized)
to candidate Dsui_2709 Dsui_2709 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
Query= CharProtDB::CH_024869 (274 letters) >FitnessBrowser__PS:Dsui_2709 Length = 272 Score = 410 bits (1053), Expect = e-119 Identities = 203/271 (74%), Positives = 227/271 (83%) Query: 1 MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLK 60 MQ+LQ IIE A+E R + P A EAV+ V+ LD G LRVAEKI+G WVTHQW+K Sbjct: 1 MQELQQIIEDAWENRTSLQPGTAPAKIGEAVDHVLEQLDKGTLRVAEKINGDWVTHQWIK 60 Query: 61 KAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN 120 KAVLLSFR+ DN + + + R+FDKV KFA+YDE F++ GFRVVPPA R+G++IA+ Sbjct: 61 KAVLLSFRLQDNVLQQSGDLRFFDKVQTKFANYDEHAFRQGGFRVVPPAVARRGSYIAKG 120 Query: 121 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180 VLMPSYVNIGAYVDE TMVDTW TVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED Sbjct: 121 AVLMPSYVNIGAYVDENTMVDTWVTVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180 Query: 181 NCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS 240 NCFIGARSEVVEGVIV EGSVISMGVYI QST+IYDRETGEI YGR+P GSVVVSGNLP+ Sbjct: 181 NCFIGARSEVVEGVIVGEGSVISMGVYISQSTKIYDRETGEISYGRIPPGSVVVSGNLPA 240 Query: 241 KDGKYSLYCAVIVKKVDAKTRGKVGINELLR 271 KDG +SLYCAVIVKKVDA+TR K INELLR Sbjct: 241 KDGSHSLYCAVIVKKVDAQTRAKTSINELLR 271 Lambda K H 0.318 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 308 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 272 Length adjustment: 25 Effective length of query: 249 Effective length of database: 247 Effective search space: 61503 Effective search space used: 61503 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate Dsui_2709 Dsui_2709 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.6677.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6677.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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