Align acetylglutamate kinase; EC 2.7.2.8 (characterized)
to candidate 5207681 Shew_0203 acetylglutamate kinase (RefSeq)
Query= CharProtDB::CH_001694 (258 letters) >FitnessBrowser__PV4:5207681 Length = 261 Score = 237 bits (605), Expect = 2e-67 Identities = 126/253 (49%), Positives = 171/253 (67%), Gaps = 1/253 (0%) Query: 5 LIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNG 64 L++K+GG L+ E L RL ++ N +S Q +++VHGGGC+VDE +K + K +G Sbjct: 8 LVLKVGGALMQCEMGLARLMASAANIIKSGQS-VILVHGGGCLVDEQLKANGMETVKLDG 66 Query: 65 LRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGL 124 LRVTP +Q+ I+ GALAGT+NK L A A K I +VG+ L DG V + DE+LG VG Sbjct: 67 LRVTPEEQVPIVVGALAGTSNKILQASAIKAGITSVGMSLCDGAIVNGSIKDEQLGFVGE 126 Query: 125 AQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSG 184 P P +N LL G++P+VSSI V D G L+NVNADQAAT +A + L+LLSDVSG Sbjct: 127 VSPNDPTYLNFLLAQGWMPIVSSIAVDDAGNLLNVNADQAATVIAKLVEGQLVLLSDVSG 186 Query: 185 ILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLP 244 +LDGKGQ I + A A++L + G+I GM VKV AAL+ A+ +G+PV +ASWR AEQL Sbjct: 187 VLDGKGQLIKTLDKAHADELTKLGVIEKGMKVKVEAALEVAQWMGQPVQVASWRDAEQLS 246 Query: 245 ALFNGMPMGTRIL 257 AL G +GT+++ Sbjct: 247 ALEKGESIGTQVM 259 Lambda K H 0.317 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 217 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 258 Length of database: 261 Length adjustment: 24 Effective length of query: 234 Effective length of database: 237 Effective search space: 55458 Effective search space used: 55458 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate 5207681 Shew_0203 (acetylglutamate kinase (RefSeq))
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))
../bin/blast/fastacmd -i /tmp/list.27925.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27925.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.