Align Succinylornithine transaminase (EC 2.6.1.81) (characterized)
to candidate 5208066 Shew_0578 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
Query= reanno::pseudo1_N1B4:Pf1N1B4_3440 (406 letters) >FitnessBrowser__PV4:5208066 Length = 405 Score = 546 bits (1407), Expect = e-160 Identities = 267/403 (66%), Positives = 323/403 (80%), Gaps = 1/403 (0%) Query: 1 MSVEHAAVERADFDQVMVPNYAPAAFIPVRGAGSRVWDQSGRELIDFAGGIAVNVLGHAH 60 MSV H + RA FD+VMVPNYAP+A IPVRG GSRVWDQ G E +DFAGGIAVN LGH H Sbjct: 1 MSVNHK-LTRAQFDEVMVPNYAPSAVIPVRGEGSRVWDQEGNEFVDFAGGIAVNCLGHCH 59 Query: 61 PALVAALTEQANKLWHVSNVFTNEPALRLAHKLVDATFAERVFFCNSGAEANEAAFKLAR 120 PALV AL EQ K+WH++NV TNEPAL LA KLV+ATFAE+V+F NSGAEANEAA KLAR Sbjct: 60 PALVGALKEQGEKIWHLANVMTNEPALALATKLVEATFAEKVYFANSGAEANEAALKLAR 119 Query: 121 RVAHDRFGTEKYEIVAALNSFHGRTLFTVNVGGQSKYSDGFGPKITGITHVPYNDLAALK 180 R A D+FG EK +I+A +FHGRT FTV+VGGQ+ YSDGFGPK ITH+P+ND+AAL+ Sbjct: 120 RYALDKFGAEKDQIIAFDKAFHGRTFFTVSVGGQAAYSDGFGPKPQSITHLPFNDIAALE 179 Query: 181 AAVSDKTCAVVLEPIQGEGGVLPAELSYLQGARELCDAHNALLVFDEVQTGMGRSGKLFA 240 A VSDKTCA++LEP+QGEGG++ A+ +L+ R L D HNAL++FDEVQTG+GR G+L+A Sbjct: 180 AEVSDKTCAIMLEPLQGEGGIIDADPEFLRAVRALADKHNALVIFDEVQTGVGRLGELYA 239 Query: 241 YQHYGVTPDILTSAKSLGGGFPIAAMLTTEDLAKHLVVGTHGTTYGGNPLACAVAEAVID 300 Y VTPDILT+AK+LGGGFPIAAMLTT ++A HL +GTHG+TYGGNPLACA+ AV+D Sbjct: 240 YMRTEVTPDILTTAKALGGGFPIAAMLTTTEIASHLKIGTHGSTYGGNPLACAIGNAVLD 299 Query: 301 VINTPEVLNGVNAKHDKFKTRLEQIGEKYGLFTEVRGLGLLLGCVLSDAWKGKAKDIFNA 360 V+NTPEVL+GV + + L QI EKY +FTEVRG GLLLG VL++ ++G++KD A Sbjct: 300 VVNTPEVLDGVKRREQLLRDGLNQINEKYHVFTEVRGQGLLLGAVLNEQYQGRSKDFLVA 359 Query: 361 AEREGLMILQAGPDVIRFAPSLVVEDADIDAGLDRFERAAAKL 403 EGLM L AGP+VIRF PSLV+ +ADI GL RFERA AK+ Sbjct: 360 GTSEGLMCLIAGPNVIRFTPSLVIPEADIAEGLARFERAVAKV 402 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 503 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 406 Length of database: 405 Length adjustment: 31 Effective length of query: 375 Effective length of database: 374 Effective search space: 140250 Effective search space used: 140250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate 5208066 Shew_0578 (bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq))
to HMM TIGR03246 (astC: succinylornithine transaminase family (EC 2.6.1.81))
../bin/blast/fastacmd -i /tmp/list.4724.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4724.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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