Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate 5209745 Shew_2198 histidinol dehydrogenase (RefSeq)
Query= BRENDA::P06988 (434 letters) >FitnessBrowser__PV4:5209745 Length = 443 Score = 490 bits (1261), Expect = e-143 Identities = 251/425 (59%), Positives = 319/425 (75%), Gaps = 1/425 (0%) Query: 7 IDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTAL 66 +DW + + +R+ L R + ++ + V I+D V ++GD AL+ +S KFDK + AL Sbjct: 14 LDWQALNDQARREALSRSPLIGDANLEQQVKAIIDQVASQGDVALKAFSQKFDKVELDAL 73 Query: 67 KVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVAS 126 ++S IAAASER++ E+K A+ A +NIETFH AQ +D+ETQ GVRC+ + P+ Sbjct: 74 RLSDAAIAAASERVTPEIKAAIEQAKQNIETFHQAQAFKGIDLETQAGVRCELRSEPIEK 133 Query: 127 VGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEILYAAQLCGVQDVFNVGG 186 VGLYIPGGSAPL STVLMLA PA IAGC++ VL SPPPI D I+YAA+ CG+ D++ +GG Sbjct: 134 VGLYIPGGSAPLISTVLMLALPAKIAGCEQRVLVSPPPIDDAIVYAAKACGITDIYQIGG 193 Query: 187 AQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGA-AIDMPAGPSEVLVIADS 245 AQAIAALA GTESVP VDKIFGPGN +VTEAKR V+Q +IDMPAGPSEVLVIAD+ Sbjct: 194 AQAIAALAQGTESVPAVDKIFGPGNRYVTEAKRLVAQDSRCVVSIDMPAGPSEVLVIADN 253 Query: 246 GATPDFVASDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQALNAS 305 A PDF+A+DLLSQAEHGPDSQV+L+T + +A V +++ QLA LPRAE A QAL+AS Sbjct: 254 EANPDFIAADLLSQAEHGPDSQVMLVTDSQTLADAVNQSLGEQLARLPRAEIAMQALSAS 313 Query: 306 RLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGT 365 R ++ +D+AQ E+SN+YGPEHLIIQTR R+L+ I +AGSVFLG ++PES GDYASGT Sbjct: 314 RTLIVEDMAQAAEVSNRYGPEHLIIQTRAPRKLLSKIRAAGSVFLGAYTPESVGDYASGT 373 Query: 366 NHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTL 425 NHVLPTYGY+ SSL LADF +R TVQELS EG L + TLA+AE+L AH+NAV + Sbjct: 374 NHVLPTYGYSRAVSSLSLADFSRRFTVQELSAEGLRGLGECVMTLASAEQLDAHRNAVAV 433 Query: 426 RVNAL 430 R+ L Sbjct: 434 RLATL 438 Lambda K H 0.315 0.128 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 492 Number of extensions: 15 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 434 Length of database: 443 Length adjustment: 32 Effective length of query: 402 Effective length of database: 411 Effective search space: 165222 Effective search space used: 165222 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate 5209745 Shew_2198 (histidinol dehydrogenase (RefSeq))
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))
../bin/blast/fastacmd -i /tmp/list.11262.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11262.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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