Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate 5211055 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq)
Query= BRENDA::D2YZL2 (364 letters) >FitnessBrowser__PV4:5211055 Length = 364 Score = 647 bits (1669), Expect = 0.0 Identities = 318/362 (87%), Positives = 343/362 (94%) Query: 1 MSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATL 60 MSYQ+AVLAGDGIGPEVMAEARKVL AVE+RF L IEYSEYDVGGAAID+HGCPLPE+TL Sbjct: 1 MSYQVAVLAGDGIGPEVMAEARKVLKAVEERFSLDIEYSEYDVGGAAIDHHGCPLPESTL 60 Query: 61 KGCEAADAVLFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSP 120 KGCE ADA+LFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLH GLEHMSP Sbjct: 61 KGCEEADAILFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHVGLEHMSP 120 Query: 121 LRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEIRRIAKIAFES 180 LRSDIS +GFD+LCVRELTGGIYFGKPKGRQGEGE EEAFDTMRYSR+E+RRIAKIAFE+ Sbjct: 121 LRSDISAQGFDVLCVRELTGGIYFGKPKGRQGEGEQEEAFDTMRYSRREVRRIAKIAFEA 180 Query: 181 AQGRRKKVTSVDKANVLACSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDV 240 A+GRRKKVTSVDKANVLACSVLWREVVEEVAK++PDV LEHIYIDNATMQLLRRP +FDV Sbjct: 181 ARGRRKKVTSVDKANVLACSVLWREVVEEVAKEFPDVALEHIYIDNATMQLLRRPFDFDV 240 Query: 241 MLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPDIAGQGIANPVAQI 300 MLCSNLFGDI+SDEIAMLTGSMGLL+S+S+NS GFG+YEPAGGSAPDIAGQGIANP+AQI Sbjct: 241 MLCSNLFGDIISDEIAMLTGSMGLLSSVSLNSDGFGLYEPAGGSAPDIAGQGIANPIAQI 300 Query: 301 LSAALLLRHSLKLEDAALAIEAAVSKALSDGYLTCELLPASERSQAKSTSQMGDYIAQAI 360 LSAALLLRHSLK E AA AIE AV+KALSDGYLT ELLPA +R +AKST +MGDYIAQA+ Sbjct: 301 LSAALLLRHSLKEEAAAKAIEDAVAKALSDGYLTGELLPADQRDKAKSTREMGDYIAQAV 360 Query: 361 AE 362 E Sbjct: 361 RE 362 Lambda K H 0.317 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 609 Number of extensions: 17 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 364 Length of database: 364 Length adjustment: 29 Effective length of query: 335 Effective length of database: 335 Effective search space: 112225 Effective search space used: 112225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate 5211055 Shew_3471 (3-isopropylmalate dehydrogenase (RefSeq))
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.21557.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21557.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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